Factsheet for VIT_12s0034g02550.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103890.2.1	Tomato	nucleus	71.96	75.46
PGSC0003DMT400064171	Potato	nucleus	71.52	75.0
KRH59146	Soybean	plastid	74.39	74.72
KRH43038	Soybean	plastid	73.51	74.0
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	61.37	73.35
CDY65607	Canola	plastid	67.99	71.79
AT3G58970.1	Thale cress	mitochondrion, plastid	68.87	71.56
Bra007423.1-P	Field mustard	plastid	67.33	71.1
CDY49260	Canola	plastid	67.33	71.1
Bra022373.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	65.12	70.24
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	65.12	70.24
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	64.24	69.45
TraesCS1B01G219000.1	Wheat	mitochondrion	64.46	62.39
TraesCS1D01G208700.1	Wheat	mitochondrion	63.8	62.15
TraesCS1A01G205400.1	Wheat	mitochondrion	63.36	61.85
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	64.24	60.75
Zm00001d029808_P001	Maize	mitochondrion, plastid	62.47	59.45
EER91996	Sorghum	mitochondrion	62.47	59.2
Zm00001d047388_P001	Maize	mitochondrion, plastid	61.59	58.61
CDY33715	Canola	cytosol	45.47	55.53
CDY39718	Canola	cytosol	45.92	55.03
AT4G28580.1	Thale cress	mitochondrion, plastid	47.9	53.19
Bra032683.1-P	Field mustard	plastid	38.19	50.44
Zm00001d027582_P001	Maize	plastid	47.24	48.86
OQU93276	Sorghum	plastid	46.36	48.61
VIT_05s0020g04720.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.5	48.33
Os03t0137700-01	Rice	plastid	46.36	48.28
VIT_07s0141g00590.t01	Wine grape	cytosol	40.18	46.79
VIT_09s0018g00600.t01	Wine grape	nucleus, peroxisome, plasma membrane	36.87	37.61
VIT_01s0011g00450.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	34.0	36.58
VIT_07s0031g02820.t01	Wine grape	cytosol	33.11	33.86
VIT_09s0018g00570.t01	Wine grape	nucleus	17.44	33.76
VIT_03s0091g01190.t01	Wine grape	cytosol	36.2	32.73
VIT_06s0061g01060.t01	Wine grape	plastid	19.43	19.73

Protein Annotations

Gene3D:1.20.58.340	EntrezGene:100246349	wikigene:100246349	Gene3D:2.40.128.330	MapMan:24.3.3.1	ProteinID:CCB48651
ProteinID:CCB48651.1	ncoils:Coil	UniProt:F6H944	EMBL:FN595497	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	EntrezGene:LOC100246349	wikigene:LOC100246349
InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544	PANTHER:PTHR13890	PANTHER:PTHR13890:SF2	SUPFAM:SSF144083	TIGR:TC67258
TMHMM:TMhelix	UniParc:UPI0001984692	ArrayExpress:VIT_12s0034g02550	EnsemblPlantsGene:VIT_12s0034g02550	EnsemblPlants:VIT_12s0034g02550.t01	unigene:Vvi.15590
RefSeq:XP_002265195	RefSeq:XP_002265195.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:19013320..19023976

Molecular Weight (calculated)

50460.8 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.178

Length

453 amino acids

Sequence
(BLAST)

001: MGKGPFSFRR TSSRRRLKKA PEGPSPPAPP PPMMIEASLS PNNQTANTSI AAASGGGGGA GGKAKKKTGG ARLWMRFDRC GQSELLECDK STIIRRAAIP
101: ARDLRILGPV FSHSSNILAR EKAMVVNLEF IKAIVTAEEV LLLDPLRQEV LPFVDQLRQQ LPHKSPFRMH GASPLDTQEN EMQFSTGGRW LPVPDSEGLQ
201: NELPFEFQVL EIALEVVCTY LDTNVAELER DAYPVLDELA RNVSTKNLEH VRSLKSNLTR LLARVQKVRD ELEHLLDDNE DMADLYLTRK WIQNQQNEAL
301: LGAAVSNSLI TPAPYLPRLS SHRSVSLATS NFVDDDDVED LEMLLEAYFM QLDGTRNKIL SVREYIDDTE DYVNIQLDNQ RNELIQLQLT LTIASFAIAV
401: ETLIAGLFGM NIPCPLYEMH GVFNPFVGCV TAGCILLFLL VLGYARWKKL LGS

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.