Factsheet for TraesCS1D01G208700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G205400.1	Wheat	mitochondrion	98.49	98.71
TraesCS1B01G219000.1	Wheat	mitochondrion	98.06	97.44
HORVU1Hr1G052760.2	Barley	mitochondrion, plastid	96.77	93.95
Zm00001d047388_P001	Maize	mitochondrion, plastid	81.72	79.83
EER91996	Sorghum	mitochondrion	81.94	79.71
Zm00001d029808_P001	Maize	mitochondrion, plastid	80.22	78.36
GSMUA_Achr4P29320_001	Banana	cytosol, peroxisome, plasma membrane	59.57	73.09
Solyc01g103890.2.1	Tomato	nucleus	60.86	65.51
PGSC0003DMT400064171	Potato	nucleus	60.43	65.05
VIT_12s0034g02550.t01	Wine grape	plastid	62.15	63.8
KRH59146	Soybean	plastid	61.51	63.41
KRH43038	Soybean	plastid	60.43	62.44
CDX99295	Canola	cytosol, mitochondrion, nucleus, plastid	55.27	61.34
AT3G58970.1	Thale cress	mitochondrion, plastid	57.2	61.01
CDX92290	Canola	cytosol, mitochondrion, nucleus, plastid	55.05	60.95
Bra022373.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.05	60.95
CDY49260	Canola	plastid	55.91	60.61
CDY65607	Canola	plastid	55.91	60.61
Bra007423.1-P	Field mustard	plastid	55.91	60.61
CDY33715	Canola	cytosol	38.28	47.98
AT4G28580.1	Thale cress	mitochondrion, plastid	41.94	47.79
CDY39718	Canola	cytosol	38.71	47.62
TraesCS5D01G391700.1	Wheat	plastid	37.85	45.36
Bra032683.1-P	Field mustard	plastid	32.69	44.31
TraesCS2D01G354900.2	Wheat	cytosol, nucleus, plasma membrane	32.47	35.28
TraesCS3D01G373700.1	Wheat	mitochondrion	30.54	35.06
TraesCS7D01G494700.1	Wheat	plastid	33.33	34.83
TraesCS3D01G373600.1	Wheat	mitochondrion	29.68	33.91
TraesCS3D01G408500.1	Wheat	mitochondrion	30.11	31.11
TraesCS4D01G025300.1	Wheat	plastid	17.2	17.9

Protein Annotations

EnsemblPlants:TraesCS1D01G208700.1	EnsemblPlantsGene:TraesCS1D01G208700	Gene3D:1.20.58.340	Gene3D:2.40.128.330	ncoils:Coil	PANTHER:PTHR13890
PANTHER:PTHR13890:SF2	SEG:seg	TIGR:cd12823	TMHMM:TMhelix	MapMan:24.3.3.1	:

Description

No Description!

Coordinates

chr1D:-:294743026..294745306

Molecular Weight (calculated)

50897.0 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.166

Length

465 amino acids

Sequence
(BLAST)

001: MGRRSGGRKL PFFSAASTSS STKRTRSARR LPSLPKPSSP PPPSPTTPPP APQTTTSPPA PSPGGGAAVA AKVGKKKAGA RLWMRLDRWG SSEILELDKA
101: SIIRRAGVPP RDLRILGPVF SHSSSILARE KAMVINLEFI RAIVTAEEVL LLDPLMQEVL PFVDQLRQHL PLRSLVGGNG EHSGDGNGAK QDGSPGDQVP
201: CLNEATGAEH ELPFEFQVLE VGLEAVCSTL DSSVADLERR AIPVLDELTK NVSTKNLERV RSLKSDLTRL LARVQKVRDE IEHLLDDNED MAHLYLTRKQ
301: AQNQQVEAIM TSAASNSIVP AGASLPRLNS SFRRSVSIAT SIYLDNDVED LEMLLEAYFM QLDGIRNRIL SVREYIDDTE DYVNIQLDNQ RNELIQLQLT
401: LTIASFGIAV NTFIAGAFAM NIPCHFYDIT DGSFFWPFVG GTSSGCFVIS VVLLGYAWWK KLLGP

Best Arabidopsis Sequence Match ( AT3G58970.1 )
(BLAST)

001: MGKGPLSFRR LSSIRHRKKG SAVKDDSAQT STPSSPPPPL PIHAGGSAVG ATGKAKKKTG GARLWMRFDR TGAMEVVECD KSTIIKRASV PARDLRILGP
101: VFSHSSNILA REKAIVVNLE VIKAIVTAEE VLLLDPLRPE VLPFVERLKQ QFPQRNGNEN ALQASANVQS PLDPEAAEGL QSELPFEFQV LEIALEVVCS
201: FVDKSVAALE TEAWPVLDEL TKNVSTENLE YVRSLKSNLT RLLARVQKVR DELEHLLDDN EDMADLYLTR KWIQNQQTEA ILAGTASNSI ALPAHNTSNL
301: HRLTSNRSAS MVTSNTEEDD VEDLEMLLEA YFMQLDGMRN KILTVREYID DTEDYVNIQL DNQRNELIQL QLTLTIASFA IAAETLLASL FGMNIPCPLY
401: SIHGVFGYFV WSVTALCIVL FMVTLGYARW KKLLGS

Arabidopsis Description

MRS2-4MRS2-4 [Source:UniProtKB/TrEMBL;Acc:A0A178VB54]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.