Factsheet for Solyc09g065920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038981	Potato	mitochondrion	97.61	97.61
PGSC0003DMT400038974	Potato	cytosol	36.34	93.84
Os03t0742400-01	Rice	plasma membrane	49.87	75.5
VIT_07s0141g00590.t01	Wine grape	cytosol	73.21	70.95
EER90897	Sorghum	cytosol	70.29	68.48
HORVU5Hr1G094250.1	Barley	plastid	70.03	68.04
TraesCS5D01G391700.1	Wheat	plastid	69.23	67.27
TraesCS5A01G382400.1	Wheat	plastid	69.5	66.84
KRG95626	Soybean	cytosol	68.17	66.24
Solyc03g005390.2.1	Tomato	cytosol, peroxisome, vacuole	68.97	65.82
KRH67301	Soybean	cytosol	67.64	65.72
TraesCS5B01G386300.1	Wheat	plastid	66.84	64.95
Zm00001d044912_P001	Maize	plastid	13.79	59.09
Zm00001d032490_P001	Maize	cytosol	26.79	57.06
GSMUA_Achr4P22510_001	Banana	cytosol, mitochondrion, peroxisome, plastid	58.62	52.49
Solyc01g103890.2.1	Tomato	nucleus	45.89	40.05
Solyc06g068490.2.1	Tomato	plastid	47.75	39.05
Solyc05g012220.2.1	Tomato	cytosol, peroxisome, plasma membrane	41.38	37.59
Solyc01g106900.2.1	Tomato	cytosol, peroxisome, plastid	46.42	35.14
Solyc11g066660.1.1	Tomato	plastid	23.61	19.91

Protein Annotations

Gene3D:2.40.128.330	MapMan:24.3.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015095	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	GO:GO:0055085	GO:GO:1903830	UniProt:K4CUL8	InterPro:MgTranspt_CorA/ZnTranspt_ZntB	PFAM:PF01544
PANTHER:PTHR13890	PANTHER:PTHR13890:SF8	SUPFAM:SSF144083	EnsemblPlantsGene:Solyc09g065920.2	EnsemblPlants:Solyc09g065920.2.1	TMHMM:TMhelix
UniParc:UPI000276CB3B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:64207278..64212036

Molecular Weight (calculated)

42528.2 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.105

Length

377 amino acids

Sequence
(BLAST)

001: MKTGVSRRWI LVDSKGQSSI LDLDKYAIMK RVSIHARDLR ILDPLLSYPS AIFGREKAIV LNLEHIKAII TTEEVLIRDP MDDNVLPVVE ELQRRLPLPA
101: ISLGEGEDDD QSVVNGTRNE MQTIEPTEFP FEFRALEVAL EGVCSYLDTQ TRELETAAYP ALDELTSKIS SRNLDRVRKL KSAMTRLTSR VQKVRDDLEQ
201: LLEDDGDMAD LYLSRKLVAG VSSPLSGQVA PYWSPDTFSI RSKLLSKASR ISGITHEETD VEELEMLLEA YFVQIESTMN KLTTLREYID DTEDYINIQL
301: DNHRNQLIQL ELFLSSGTVC LTVYSLVAAI FGMNIPVPWK KDHGYLFKWV VILSGIASAS VFLSIIAYAR HKGLVGS

Best Arabidopsis Sequence Match ( AT5G09690.1 )
(BLAST)

001: MSPDGELVPV DSSAVVTAKR KTSQLSRSWI SIDATGQKTV LDVDKHVIMH RVQIHARDLR ILDPNLFYPS AILGRERAIV LNLEHIKAII TAEEVLIRDS
101: SDENVIPVLE EFQRRLPVGN EAHGVHGDGD LGEEDESPFE FRALEVALEA ICSFLAARTT ELEKFAYPAL DELTLKISSR NLERVRKLKS AMTRLTARVQ
201: KVRDELEQLL DDDGDMADLY LTRKLVGASS SVSVSDEPIW YPTSPTIGSM ISRASRVSLV TVRGDDETDV EELEMLLEAY FMQIDSTLNK LTELREYIDD
301: TEDYINIQLD NHRNQLIQLE LMLSAGTVCV SVYSMIAGIF GMNIPNTWNH DHGYIFKWVV SLTGTFCIVL FVIILSYARF RGLIGS

Arabidopsis Description

ATMGT7magnesium transporter 7 [Source:TAIR;Acc:AT5G09690]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.