Factsheet for VIT_01s0011g05250.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
peroxisome 1
extracellular 1
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02980.t01	Wine grape	cytosol	56.12	71.56
KRH42545	Soybean	mitochondrion	66.19	67.15
Solyc04g074100.2.1	Tomato	mitochondrion	64.75	66.18
KRH58638	Soybean	mitochondrion	63.31	65.19
PGSC0003DMT400016382	Potato	mitochondrion	63.31	64.71
Bra016187.1-P	Field mustard	mitochondrion	60.43	64.12
CDX96277	Canola	mitochondrion	60.43	64.12
CDY11545	Canola	mitochondrion	60.43	64.12
Solyc04g007840.2.1	Tomato	mitochondrion	65.47	63.19
AT1G70780.1	Thale cress	mitochondrion	60.43	60.0
CDY23481	Canola	mitochondrion	60.43	60.0
VIT_14s0006g01210.t01	Wine grape	cytosol, mitochondrion	62.59	60.0
PGSC0003DMT400075823	Potato	mitochondrion	61.15	59.44
CDX68330	Canola	mitochondrion	60.43	59.15
Bra003942.1-P	Field mustard	mitochondrion	60.43	59.15
AT1G23150.1	Thale cress	cytosol, mitochondrion	59.71	58.87
CDY03721	Canola	mitochondrion	55.4	58.78
Bra007943.1-P	Field mustard	mitochondrion	55.4	58.78
CDY71620	Canola	cytosol, mitochondrion	58.27	58.7
CDY21419	Canola	mitochondrion	56.83	57.25
CDY09482	Canola	mitochondrion	55.4	57.04
CDY41461	Canola	cytosol	58.27	55.1
CDX91699	Canola	cytosol	58.27	55.1
Bra016360.1-P	Field mustard	cytosol	58.27	55.1
Bra024566.1-P	Field mustard	cytosol	23.02	47.76
TraesCS4A01G166700.1	Wheat	mitochondrion	42.45	39.07
HORVU5Hr1G018240.1	Barley	mitochondrion	43.17	38.96
TraesCS5A01G069000.1	Wheat	mitochondrion	43.17	38.22
Zm00001d048449_P001	Maize	mitochondrion	42.45	34.71
Os02t0324700-01	Rice	cytosol, mitochondrion	41.73	31.02
TraesCS5D01G081100.1	Wheat	mitochondrion	42.45	29.06

Protein Annotations

ArrayExpress:VIT_01s0011g05250	EMBL:AM464048	EMBL:FN595752	EnsemblPlants:VIT_01s0011g05250.t01	EnsemblPlantsGene:VIT_01s0011g05250	EntrezGene:100247453
EntrezGene:LOC100247453	PANTHER:PTHR33270	PANTHER:PTHR33270:SF5	ProteinID:CAN65811	ProteinID:CAN65811.1	ProteinID:CBI26875
ProteinID:CBI26875.3	RefSeq:XP_002284639	RefSeq:XP_002284639.1	unigene:Vvi.7455	UniParc:UPI00015C8739	UniProt:D7T8Q4
wikigene:100247453	wikigene:LOC100247453	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:+:4879097..4879979

Molecular Weight (calculated)

15079.2 Da

IEP (calculated)

10.379

GRAVY (calculated)

-0.265

Length

139 amino acids

Sequence
(BLAST)

001: MLLYKQKKNQ SAGKANRLLI SINVLGSAGP IRFVVSEDEL VAAVIDTALK SYAREGRLPI LGSDLNNFLL YCSNAGSDAL SPWETIGSNG TRNFMLCKKP
101: QPQNTTEVGV EGRAGMPRKG SGSWKAWINK SLNLKISSH

Best Arabidopsis Sequence Match ( AT1G70780.1 )
(BLAST)

001: MLLYNKQKKN QNAKGNRILI SVTVLGSAGP IRFVAYEDDL VASVIDTALK GYAREGRLPL LGSDFNDFLL YCPMVGPEAL STWDAIGSLG ARNFMLCRKP
101: EEKKVEESNG RSDSTINGAR KGGSLKAWIN KSFNLKVSSH

Arabidopsis Description

At1g70780 [Source:UniProtKB/TrEMBL;Acc:Q9S812]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.