CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71689
CDX81228
CDY18706
CDY31314
CDY32642
CDY38850
CDY46811
CDY51292
CDY56489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	CDX71689	AT5G51110.1	21798944
AT3G13440.1	CDY32642	AT5G51110.1	21798944
AT3G13440.1	CDY38850	AT5G51110.1	21798944
AT3G13440.1	CDX81228	AT5G64560.1	21798944
AT3G13440.1	CDY18706	AT5G64560.1	21798944
AT3G13440.1	CDY31314	AT5G64560.1	21798944
AT3G13440.1	CDY46811	AT5G64560.1	21798944
AT3G13440.1	CDY51292	AT5G64560.1	21798944
AT3G13440.1	CDY56489	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039401.1-P	Field mustard	cytosol	39.49	96.88
CDY23600	Canola	cytosol	68.79	86.75
Bra039402.1-P	Field mustard	endoplasmic reticulum, extracellular	84.39	85.48
CDY24184	Canola	plastid	81.53	83.12
AT3G13440.1	Thale cress	cytosol	64.97	73.38
PGSC0003DMT400061225	Potato	cytosol	50.32	67.81
KRH65321	Soybean	cytosol	52.55	64.2
Solyc12g100070.1.1	Tomato	cytosol	39.81	63.78
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	49.36	56.99
Zm00001d012932_P001	Maize	extracellular	45.22	51.08
EER93176	Sorghum	cytosol	45.22	50.71
HORVU5Hr1G114620.1	Barley	cytosol	45.22	49.48
TraesCS5A01G486400.1	Wheat	cytosol	45.22	49.48
TraesCS5D01G500400.1	Wheat	cytosol	45.22	49.48
Os03t0824200-01	Rice	cytosol	44.9	49.47
CDY43990	Canola	nucleus	69.75	48.67
TraesCS5B01G500200.1	Wheat	plastid	44.9	47.96
Zm00001d011137_P001	Maize	plastid	20.06	38.65
Zm00001d051490_P001	Maize	cytosol	23.57	31.9
Zm00001d042153_P001	Maize	mitochondrion	37.58	19.93

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078EYC8	EnsemblPlants:CDY07090	ProteinID:CDY07090	ProteinID:CDY07090.1
InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00123426001	PFAM:PF05175
ScanProsite:PS00092	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Small_mtfrase_dom
UniParc:UPI0004EE290B	SEG:seg	:	:	:	:

Description

BnaCnng01050D

Coordinates

chrLK031975:-:45812..47045

Molecular Weight (calculated)

35406.4 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.089

Length

314 amino acids

Sequence
(BLAST)

001: MEDLIILYNP TFFFFCTLSC FIPPSPSPSP PCSVKSTLLE VSQDYPKRRF TKSSILYAFN LQWTVMSEMT SRTADIMRVS SHREVYEPCD DSFALVDALL
101: ADQTNLINHD PKVCMEIGCG SGYVITSLIL LLKEKLPNVH YLATDTNQIA ARVTNETLQA HGVSAEVVCT DIASCLEERL AGLVDVMVVN PPYVPTPEYE
201: VGMEGIASAW AGGENGRSVI DRVLPVVDRL LSEKGWFYLV TLTSNYPSEI CLGMRKRGYA SRIVVQRSTE EENLIILKFW RDKDEESVDK ETSSESFVKQ
301: FSRSLSSFME KQWR

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.