Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024309.1-P | |
| Bra029188.1-P | |
| Bra031913.1-P | |
| Bra037781.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13440.1 | Bra029188.1-P | AT5G51110.1 | 21798944 |
| AT3G13440.1 | Bra024309.1-P | AT5G64560.1 | 21798944 |
| AT3G13440.1 | Bra031913.1-P | AT5G64560.1 | 21798944 |
| AT3G13440.1 | Bra037781.1-P | AT5G64560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027435.1-P | Field mustard | cytosol | 84.38 | 43.37 |
| Bra039402.1-P | Field mustard | endoplasmic reticulum, extracellular | 96.09 | 39.68 |
| AT3G13440.1 | Thale cress | cytosol | 85.94 | 39.57 |
| CDY07090 | Canola | plasma membrane | 96.88 | 39.49 |
| Solyc12g100070.1.1 | Tomato | cytosol | 59.38 | 38.78 |
| PGSC0003DMT400061225 | Potato | cytosol | 59.38 | 32.62 |
| KRH65321 | Soybean | cytosol | 63.28 | 31.52 |
| GSMUA_Achr1P18380_001 | Banana | extracellular, plasma membrane | 55.47 | 26.1 |
| EER93176 | Sorghum | cytosol | 53.12 | 24.29 |
| Zm00001d012932_P001 | Maize | extracellular | 52.34 | 24.1 |
| Os03t0824200-01 | Rice | cytosol | 48.44 | 21.75 |
| HORVU5Hr1G114620.1 | Barley | cytosol | 46.88 | 20.91 |
| TraesCS5A01G486400.1 | Wheat | cytosol | 46.88 | 20.91 |
| TraesCS5D01G500400.1 | Wheat | cytosol | 46.88 | 20.91 |
| TraesCS5B01G500200.1 | Wheat | plastid | 46.88 | 20.41 |
| Zm00001d051490_P001 | Maize | cytosol | 33.59 | 18.53 |
| Zm00001d042153_P001 | Maize | mitochondrion | 34.38 | 7.43 |
| Zm00001d011137_P001 | Maize | plastid | 0.78 | 0.61 |
Protein Annotations
| EnsemblPlants:Bra039401.1 | EnsemblPlants:Bra039401.1-P | EnsemblPlantsGene:Bra039401 | Gene3D:3.40.50.150 | InterPro:SAM-dependent_MTases | PANTHER:PTHR18895 |
| PANTHER:PTHR18895:SF71 | SUPFAM:SSF53335 | UniParc:UPI000253E94E | UniProt:M4FE80 | MapMan:35.2 | : |
Description
AT3G13440 (E=5e-062) | methyltransferase/ nucleic acid binding
Coordinates
chrScaffold000164:-:292051..292437
Molecular Weight (calculated)
14853.7 Da
IEP (calculated)
4.993
GRAVY (calculated)
-0.470
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLNPPYVPT PEYEVGMEGI ASAWAGGENG RSVIDRMLPV VDRLLSERGW FYLVTLTSNY PSEICLGMRK RGYASRIVVQ RSTEEENLII LKFWRDKDEE
101: SVDKETSSES FMKQFSRSLS SFMEKQWR
101: SVDKETSSES FMKQFSRSLS SFMEKQWR
001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR
Arabidopsis Description
AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.