CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71689
CDX81228
CDY18706
CDY31314
CDY32642
CDY38850
CDY46811
CDY51292
CDY56489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	CDX71689	AT5G51110.1	21798944
AT3G13440.1	CDY32642	AT5G51110.1	21798944
AT3G13440.1	CDY38850	AT5G51110.1	21798944
AT3G13440.1	CDX81228	AT5G64560.1	21798944
AT3G13440.1	CDY18706	AT5G64560.1	21798944
AT3G13440.1	CDY31314	AT5G64560.1	21798944
AT3G13440.1	CDY46811	AT5G64560.1	21798944
AT3G13440.1	CDY51292	AT5G64560.1	21798944
AT3G13440.1	CDY56489	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027435.1-P	Field mustard	cytosol	54.44	98.39
CDY23600	Canola	cytosol	53.56	96.79
AT3G13440.1	Thale cress	cytosol	44.22	71.58
CDY24184	Canola	plastid	48.44	70.78
CDY07090	Canola	plasma membrane	48.67	69.75
PGSC0003DMT400061225	Potato	cytosol	34.22	66.09
KRH65321	Soybean	cytosol	35.78	62.65
Solyc12g100070.1.1	Tomato	cytosol	27.11	62.24
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	32.89	54.41
EER93176	Sorghum	cytosol	29.78	47.86
Zm00001d012932_P001	Maize	extracellular	29.56	47.84
HORVU5Hr1G114620.1	Barley	cytosol	29.56	46.34
TraesCS5A01G486400.1	Wheat	cytosol	29.56	46.34
TraesCS5D01G500400.1	Wheat	cytosol	29.56	46.34
Os03t0824200-01	Rice	cytosol	29.11	45.96
TraesCS5B01G500200.1	Wheat	plastid	29.56	45.24
Zm00001d011137_P001	Maize	plastid	12.67	34.97
Zm00001d051490_P001	Maize	cytosol	16.22	31.47
Zm00001d042153_P001	Maize	mitochondrion	26.22	19.93

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	Gene3D:3.40.50.150	GO:A0A078HZF9	UniProt:A0A078HZF9
EnsemblPlants:CDY43990	ProteinID:CDY43990	ProteinID:CDY43990.1	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
EnsemblPlantsGene:GSBRNA2T00079384001	InterPro:IPR012295	HAMAP:MF_00408	PFAM:PF00352	PFAM:PF05175	PRINTS:PR00686
ScanProsite:PS00092	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
SUPFAM:SSF55945	InterPro:Small_mtfrase_dom	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic
UniParc:UPI0004EEE300	SEG:seg	:	:	:	:

Description

BnaA05g25850DBnaA05g25850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZF9]

Coordinates

chrLK032576:-:36881..40689

Molecular Weight (calculated)

50385.3 Da

IEP (calculated)

7.684

GRAVY (calculated)

-0.054

Length

450 amino acids

Sequence
(BLAST)

001: MSEKPPRIAD IMRVSSHREV YEPCDDSFAL VDALLADQTN LINHNPNVCM EIGCGSGYVI TSLILLLKPK LPNVHYLATD TNPIAARVTN QTLEAHGVKA
101: EIVCTDIASC LEERLAGSVD VMVVNPPYVP TPEYEVGMEG IASAWAGGEN GRSVIDRMLP VVDRLLSEKG WFYLVTLSSN YPAEICLMMR KRGFAWRILV
201: QRSTEEENLV ILKFWRDGDE VSLEKETSTA SLVSEFSRSL SSFMEKQWRQ MTDQGLEGSN PVDLAEHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA
301: EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEYFS KMAARKYARI VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG
401: LIYRMKVPKI VLLIFVSGKI VITGAKMREE TYKAFENIYP VLTEFRKIQQ

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.