CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71689
CDX81228
CDY18706
CDY31314
CDY32642
CDY38850
CDY46811
CDY51292
CDY56489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13440.1	CDX71689	AT5G51110.1	21798944
AT3G13440.1	CDY32642	AT5G51110.1	21798944
AT3G13440.1	CDY38850	AT5G51110.1	21798944
AT3G13440.1	CDX81228	AT5G64560.1	21798944
AT3G13440.1	CDY18706	AT5G64560.1	21798944
AT3G13440.1	CDY31314	AT5G64560.1	21798944
AT3G13440.1	CDY46811	AT5G64560.1	21798944
AT3G13440.1	CDY51292	AT5G64560.1	21798944
AT3G13440.1	CDY56489	AT5G64560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23600	Canola	cytosol	70.45	87.15
CDY07090	Canola	plasma membrane	83.12	81.53
AT3G13440.1	Thale cress	cytosol	67.21	74.46
PGSC0003DMT400061225	Potato	cytosol	51.62	68.24
KRH65321	Soybean	cytosol	54.22	64.98
Solyc12g100070.1.1	Tomato	cytosol	40.91	64.29
GSMUA_Achr1P18380_001	Banana	extracellular, plasma membrane	50.32	56.99
EER93176	Sorghum	cytosol	45.45	50.0
Zm00001d012932_P001	Maize	extracellular	45.13	50.0
Os03t0824200-01	Rice	cytosol	45.13	48.77
CDY43990	Canola	nucleus	70.78	48.44
TraesCS5A01G486400.1	Wheat	cytosol	44.81	48.08
HORVU5Hr1G114620.1	Barley	cytosol	44.48	47.74
TraesCS5D01G500400.1	Wheat	cytosol	44.48	47.74
TraesCS5B01G500200.1	Wheat	plastid	44.81	46.94
Zm00001d011137_P001	Maize	plastid	20.13	38.04
Zm00001d051490_P001	Maize	cytosol	23.7	31.47
Zm00001d042153_P001	Maize	mitochondrion	38.31	19.93

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078GFT0	UniProt:A0A078GFT0	EnsemblPlants:CDY24184	ProteinID:CDY24184
ProteinID:CDY24184.1	InterPro:DNA_methylase_N6_adenine_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008276
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00026269001	PFAM:PF05175
ScanProsite:PS00092	PANTHER:PTHR18895	PANTHER:PTHR18895:SF71	InterPro:PrmC-related	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
InterPro:Small_mtfrase_dom	TIGRFAMs:TIGR00537	UniParc:UPI0004EDAF27	SEG:seg	:	:

Description

BnaC01g37640DBnaC01g37640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFT0]

Coordinates

chrLK032155:-:52607..53798

Molecular Weight (calculated)

34637.7 Da

IEP (calculated)

5.441

GRAVY (calculated)

-0.097

Length

308 amino acids

Sequence
(BLAST)

001: MGPLGPLNGS FLTQLIRCNG RFNYTIIQPF SSSAHSLVSF RRPRRLLLDP LAFNLQWTVM SEMTSRTADI MRVSSHREVY EPCDDSFALV DALLADQTNL
101: INHNPKLCME IGCGSGYVIT SLILLLKEKL PNVHYLATDT NPIAARVTNE TLQAHGVSAE VVCTDIASCL EERLAGLVDV MVVNPPYVPT PEYEVGMEGI
201: ASAWAGGENG RSVIDRVLPV VDRLLSEKGW FYLVTLTSNY PSEICLVMRK RGYASRIVVQ RSTEEENLII LKFWRDKDEE GVDKETSSES FMKQFSRSLS
301: SFMEKQWR

Best Arabidopsis Sequence Match ( AT3G13440.1 )
(BLAST)

001: MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV
101: PGVHYLAIDT NPIATRVTKE TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG RTVIDKILPV VDLLLSEKGW
201: FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

Arabidopsis Description

AT3g13440/MRP15_7 [Source:UniProtKB/TrEMBL;Acc:Q8VXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.