Factsheet for Bra007149.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004169.1-P
Bra008747.1-P
Bra010274.1-P
Bra011214.1-P
Bra011221.1-P
Bra019708.1-P
Bra024044.1-P
Bra029188.1-P
Bra039229.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55240.1	Bra004169.1-P	AT1G66470.1	21798944
AT3G55240.1	Bra019708.1-P	AT1G66470.1	21798944
AT3G55240.1	Bra039229.1-P	AT2G24100.1	21798944
AT3G55240.1	Bra010274.1-P	AT4G30780.1	21798944
AT3G55240.1	Bra011214.1-P	AT4G30780.1	21798944
AT3G55240.1	Bra011221.1-P	AT4G30780.1	21798944
AT3G55240.1	Bra024044.1-P	AT4G30780.1	21798944
AT3G55240.1	Bra008747.1-P	AT5G14660.1	21798944
AT3G55240.1	Bra029188.1-P	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40206	Canola	nucleus	100.0	100.0
CDX73396	Canola	nucleus	100.0	100.0
AT3G55240.1	Thale cress	nucleus	97.89	97.89
Bra014767.1-P	Field mustard	nucleus	92.63	92.63
VIT_00s0317g00020.t01	Wine grape	nucleus	72.63	74.19
KRH01576	Soybean	cytosol	72.63	69.7
KRG92960	Soybean	nucleus	70.53	68.37
VIT_14s0036g00440.t01	Wine grape	nucleus	68.42	65.66
KRH70528	Soybean	nucleus	77.89	65.49
VIT_00s0317g00030.t01	Wine grape	nucleus	70.53	60.91
Solyc05g054750.2.1	Tomato	cytosol	56.84	60.0
PGSC0003DMT400060454	Potato	cytosol	63.16	57.69
Bra005731.1-P	Field mustard	cytosol	53.68	56.04
KRH36210	Soybean	extracellular	65.26	55.86
Bra019909.1-P	Field mustard	cytosol	35.79	37.78
Bra034101.1-P	Field mustard	mitochondrion, nucleus	40.0	11.69
Bra029826.1-P	Field mustard	mitochondrion, nucleus	40.0	11.55
Bra003465.1-P	Field mustard	nucleus	40.0	10.38
Bra004538.1-P	Field mustard	nucleus	37.89	10.03
Bra007627.1-P	Field mustard	cytosol	36.84	2.13

Protein Annotations

EnsemblPlants:Bra007149.1	EnsemblPlants:Bra007149.1-P	EnsemblPlantsGene:Bra007149	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF2
PFAM:PF09713	SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI0002542A28	UniProt:M4CSF7	MapMan:35.2

Description

AT3G55240 (E=8e-040) | Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.

Coordinates

chrA09:-:27573152..27573971

Molecular Weight (calculated)

11043.0 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.761

Length

95 amino acids

Sequence
(BLAST)

1: MAGSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSP KESDD

Best Arabidopsis Sequence Match ( AT3G55240.1 )
(BLAST)

1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD

Arabidopsis Description

Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.