Factsheet for Bra003465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67857	Canola	nucleus	98.91	98.91
CDY25057	Canola	nucleus	95.9	96.69
Bra004538.1-P	Field mustard	nucleus	72.95	74.37
TraesCS3B01G171500.1	Wheat	nucleus	57.92	59.38
KXG31543	Sorghum	nucleus	58.2	58.84
Zm00001d039349_P002	Maize	nucleus	58.2	58.68
TraesCS3A01G144700.2	Wheat	nucleus	57.92	58.4
TraesCS3D01G106200.1	Wheat	nucleus	56.83	58.1
TraesCS3D01G153500.1	Wheat	cytosol	57.38	57.85
GSMUA_Achr7P14110_001	Banana	nucleus	56.83	57.62
TraesCS3A01G104000.1	Wheat	unclear	56.28	57.38
TraesCS3B01G122400.1	Wheat	nucleus	56.01	57.1
GSMUA_Achr10P...	Banana	nucleus	55.19	55.96
GSMUA_Achr6P05700_001	Banana	nucleus	52.46	54.7
Zm00001d008954_P002	Maize	nucleus	57.65	53.42
Os01t0220200-01	Rice	cytosol, nucleus, plastid	17.49	52.89
Os05t0212400-01	Rice	cytosol, nucleus	50.55	52.11
GSMUA_Achr6P14310_001	Banana	nucleus	50.82	50.27
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	34.15	43.55
Bra014767.1-P	Field mustard	nucleus	10.38	40.0
Bra007149.1-P	Field mustard	nucleus	10.38	40.0
Bra005731.1-P	Field mustard	cytosol	9.29	37.36
Bra034101.1-P	Field mustard	mitochondrion, nucleus	30.05	33.85
Bra019909.1-P	Field mustard	cytosol	8.2	33.33
Bra029826.1-P	Field mustard	mitochondrion, nucleus	28.96	32.22
Bra007627.1-P	Field mustard	cytosol	73.22	16.29

Protein Annotations

EnsemblPlants:Bra003465.1	EnsemblPlants:Bra003465.1-P	EnsemblPlantsGene:Bra003465	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9
PFAM:PF09713	SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI0002541870	UniProt:M4CGY2	MapMan:35.2

Description

AT3G61700 (E=2e-130) | unknown protein

Coordinates

chrA07:+:13338333..13340386

Molecular Weight (calculated)

39827.9 Da

IEP (calculated)

4.261

GRAVY (calculated)

-0.351

Length

366 amino acids

Sequence
(BLAST)

001: MKSEQCAQKL QSSAQTSQES QSEQKVNQSL DASPIQDAVS VSAPSNDSRK VSRQDIELVQ NLIERCLQLY MNKEEVVKTL LTRARIEPAF TSLVWQKLEE
101: GNADFFRAYY IRLKLKKQIV IFNQLLEHQY HLMKYPPVPP KIPLAPMPNG MHHPMPPVVG MQIGYPVLPH PQMHVQGHPH IAAATAMSSC HVVNGVPAPP
201: HLQPLRMNST NDMVVDDTTV EDETPPQVVP PSSGEMAVSP ASVASSGHFP FVDSDMVMDT SVLDSEFTAD VGADGGEGGG GAGNSRDASF DQIPWDFSLS
301: DLTADLSNLG DVYVGDLEAL GDYTGSPFLP SDSEILLDSP DQEGIEEFFA DSMPGPPCSS LDEEKP

Best Arabidopsis Sequence Match ( AT3G61700.2 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.