Factsheet for TraesCS3D01G106200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G104000.1	Wheat	unclear	98.6	98.33
TraesCS3B01G122400.1	Wheat	nucleus	98.32	98.05
TraesCS3D01G153500.1	Wheat	cytosol	94.13	92.84
KXG31543	Sorghum	nucleus	88.27	87.29
Zm00001d039349_P002	Maize	nucleus	87.43	86.23
Zm00001d008954_P002	Maize	nucleus	87.15	78.99
Os01t0220200-01	Rice	cytosol, nucleus, plastid	25.7	76.03
GSMUA_Achr7P14110_001	Banana	nucleus	68.72	68.14
GSMUA_Achr10P...	Banana	nucleus	67.88	67.31
GSMUA_Achr6P05700_001	Banana	nucleus	65.08	66.38
KRH06484	Soybean	nucleus	67.04	66.12
KRH47919	Soybean	nucleus	65.92	65.74
PGSC0003DMT400024865	Potato	nucleus	67.6	65.58
CDY42046	Canola	nucleus	66.76	64.95
VIT_15s0046g00990.t01	Wine grape	nucleus	66.76	64.95
Bra004538.1-P	Field mustard	nucleus	65.08	64.9
Solyc01g010520.2.1	Tomato	nucleus	64.8	64.8
CDX80017	Canola	nucleus	64.8	64.62
AT2G46420.3	Thale cress	nucleus	63.97	63.09
KRG97168	Soybean	nucleus	62.57	62.57
GSMUA_Achr6P14310_001	Banana	nucleus	64.25	62.16
AT3G61700.2	Thale cress	nucleus	62.85	61.81
Solyc05g007270.2.1	Tomato	cytosol	67.04	59.41
CDX67857	Canola	nucleus	58.1	56.83
Bra003465.1-P	Field mustard	nucleus	58.1	56.83
CDY25057	Canola	nucleus	56.7	55.92
VIT_16s0100g00590.t01	Wine grape	nucleus	33.52	55.81
CDX71711	Canola	mitochondrion	57.26	45.66
TraesCS3D01G349400.1	Wheat	cytosol, nucleus, plastid	10.89	41.05
TraesCS6D01G093800.1	Wheat	nucleus	31.84	35.19
TraesCS1D01G286100.1	Wheat	cytosol	9.22	33.67
TraesCS7D01G407000.1	Wheat	nucleus	28.49	33.44
TraesCS4D01G203800.1	Wheat	mitochondrion	8.94	20.38
Bra007627.1-P	Field mustard	cytosol	58.38	12.71
CDY11376	Canola	cytosol	57.82	12.58

Protein Annotations

EnsemblPlants:TraesCS3D01G106200.1	EnsemblPlantsGene:TraesCS3D01G106200	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
SEG:seg	TIGRFAMs:TIGR01589	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3D:-:58298629..58302255

Molecular Weight (calculated)

38966.9 Da

IEP (calculated)

4.232

GRAVY (calculated)

-0.415

Length

358 amino acids

Sequence
(BLAST)

001: MKDSQDIQST TELQMSPQGT NEVQSNQLNT MATDAPAGDP GSLTVASNDN RKVSREDIEL VQNLIERCLQ LYMTKGEVVR TLSTRARIEP GFTTLVWQKL
101: EEENPEFFRA YYIRLKLKRQ IILFNHLLQH QCNLMKYPAH PNVPLAPMQN GMHPMPVNNL PMGYPVLQQP LMPAPGQPHI DPMVCGLSGG HVVNGIPAPG
201: GYQPIRMNSG NDMVVDNGAP EVAHGAMSSE MAVSPSSAAS SNHAPFTPSE IPGMAMDTSM LDSAFGSDIG NTEPLQLGPD GSSRDSIRSL GQLWNFSLSD
301: LTADLTSLGD LEALENYEGT PFLPSDSDLL LDSPDHNDDI VEYFADAING SQSDEEKS

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.