Factsheet for Solyc01g010520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024865	Potato	nucleus	98.04	95.12
VIT_15s0046g00990.t01	Wine grape	nucleus	78.77	76.63
Solyc05g007270.2.1	Tomato	cytosol	85.2	75.5
Bra004538.1-P	Field mustard	nucleus	74.86	74.65
CDY42046	Canola	nucleus	76.54	74.46
CDX80017	Canola	nucleus	74.58	74.37
KRH06484	Soybean	nucleus	74.02	73.0
KRH47919	Soybean	nucleus	72.35	72.14
AT2G46420.3	Thale cress	nucleus	72.63	71.63
KRG97168	Soybean	nucleus	70.67	70.67
AT3G61700.2	Thale cress	nucleus	71.79	70.6
GSMUA_Achr7P14110_001	Banana	nucleus	67.88	67.31
GSMUA_Achr10P...	Banana	nucleus	67.32	66.76
TraesCS3B01G171500.1	Wheat	nucleus	65.64	65.83
TraesCS3A01G144700.2	Wheat	nucleus	65.92	65.01
KXG31543	Sorghum	nucleus	65.64	64.92
TraesCS3D01G106200.1	Wheat	nucleus	64.8	64.8
TraesCS3D01G153500.1	Wheat	cytosol	65.64	64.74
TraesCS3B01G122400.1	Wheat	nucleus	64.53	64.35
TraesCS3A01G104000.1	Wheat	unclear	64.53	64.35
Zm00001d039349_P002	Maize	nucleus	64.25	63.36
Os01t0220200-01	Rice	cytosol, nucleus, plastid	20.39	60.33
GSMUA_Achr6P05700_001	Banana	nucleus	58.1	59.26
Zm00001d008954_P002	Maize	nucleus	63.97	57.97
GSMUA_Achr6P14310_001	Banana	nucleus	59.78	57.84
Os05t0212400-01	Rice	cytosol, nucleus	57.26	57.75
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	37.15	46.34
Solyc05g054750.2.1	Tomato	cytosol	8.66	34.44
Solyc10g084600.1.1	Tomato	nucleus	10.06	33.03
Solyc05g005230.2.1	Tomato	cytosol	9.5	33.01
Solyc10g079590.1.1	Tomato	nucleus	29.05	32.7
Solyc01g005640.2.1	Tomato	nucleus	26.82	31.89
Solyc10g079710.1.1	Tomato	nucleus	24.86	31.34
Solyc09g005730.2.1	Tomato	nucleus	8.94	31.07

Protein Annotations

EnsemblPlants:Solyc01g010520.2.1	EnsemblPlantsGene:Solyc01g010520.2	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI0002761CEC	UniProt:K4ATP7	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:5540492..5544218

Molecular Weight (calculated)

38907.5 Da

IEP (calculated)

4.338

GRAVY (calculated)

-0.435

Length

358 amino acids

Sequence
(BLAST)

001: MKSTQDPQST TEKQSSTQAS HEAQSDQQNN ATDTPVADSA SVSASGNDNR KVSREDIELV QNLIERCLQL YMNKDEVVKT LLNRARIDPG FTALVWQKLE
101: EENADFFRAY YIRLKLKKQI ILFNHLLEHQ YHLMKYPVPP KVPLTPMQNG INTMPVNNLP MGYPVLQQHP HPAAGQPHFD PMGMSSCHVV NGVPAPSNYH
201: PMQMNSGNDM VVETSASDVA PAVPPSNAMS DMPVSPASVA SSGHFPFTAS EISGMGIDTS VLDSSFPSDV ASSVGLQLPP DNGVGNSRDL LRSLDQIPWD
301: FSLSDLTADL SNLGDLGSLG NYPGSPFPEQ EDIVEEFFVD VEAAPGPAAC PQSDEEKS

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.