Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076756 | Potato | nucleus | 96.48 | 87.82 |
| Solyc10g079590.1.1 | Tomato | nucleus | 58.1 | 51.89 |
| KRG95131 | Soybean | nucleus | 57.75 | 48.38 |
| KRH66806 | Soybean | nucleus | 56.69 | 48.06 |
| Solyc01g005640.2.1 | Tomato | nucleus | 50.0 | 47.18 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 52.11 | 44.98 |
| CDY08617 | Canola | mitochondrion, nucleus | 52.11 | 44.98 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 51.06 | 44.75 |
| CDY41330 | Canola | mitochondrion, nucleus | 51.41 | 44.65 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 51.06 | 44.62 |
| CDY56714 | Canola | mitochondrion, nucleus | 51.06 | 44.21 |
| CDY00915 | Canola | mitochondrion, nucleus | 51.41 | 43.98 |
| AT5G04090.6 | Thale cress | nucleus | 47.54 | 41.93 |
| GSMUA_Achr11P... | Banana | nucleus | 45.77 | 40.0 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 42.96 | 40.0 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 42.25 | 39.34 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 43.66 | 38.75 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 41.55 | 38.69 |
| KXG29427 | Sorghum | nucleus | 43.66 | 38.51 |
| Os02t0137100-01 | Rice | nucleus | 44.01 | 37.99 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 42.61 | 37.35 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 42.25 | 37.04 |
| GSMUA_Achr10P... | Banana | nucleus | 41.2 | 36.45 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 42.25 | 35.5 |
| EER90343 | Sorghum | nucleus | 35.92 | 35.42 |
| Zm00001d054004_P001 | Maize | nucleus | 40.85 | 34.02 |
| Solyc05g054750.2.1 | Tomato | cytosol | 9.51 | 30.0 |
| HORVU6Hr1G018770.3 | Barley | plastid | 41.9 | 29.02 |
| Solyc09g005730.2.1 | Tomato | nucleus | 10.21 | 28.16 |
| Solyc01g010520.2.1 | Tomato | nucleus | 31.34 | 24.86 |
| Solyc10g084600.1.1 | Tomato | nucleus | 9.15 | 23.85 |
| Solyc05g007270.2.1 | Tomato | cytosol | 31.69 | 22.28 |
| Solyc05g005230.2.1 | Tomato | cytosol | 6.69 | 18.45 |
Protein Annotations
| EnsemblPlants:Solyc10g079710.1.1 | EnsemblPlantsGene:Solyc10g079710.1 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 | PFAM:PF09713 |
| SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI000276AA0E | UniProt:K4D2L2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr10:+:61212074..61215603
Molecular Weight (calculated)
31541.9 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.487
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEEVIRTL LDQAKIEPGF TELVWQKLEE ENQEFFRAYH VRLMVKDQIE RFNDLLERQV EAMQMIPTRP IPNGSQIRQI PPNSTCQARD HAGPHVKPEN
101: VHQTVNANLS QVYTNGASSL QPCMRSAIDV SAHSRRIDAS SNMLLAQSSN LGMLQSARGG MIKSEAGYSG NLPFMYGTET NILETHPGIT DPSVSSFSSV
201: ESDSQPVNET VLDADSSSFG FLGQIPRNFS LSDLTADFSN SSDILESYSG SAFLATDVNN LFLDPQDRRE HQGPMAPGLR RFCK
101: VHQTVNANLS QVYTNGASSL QPCMRSAIDV SAHSRRIDAS SNMLLAQSSN LGMLQSARGG MIKSEAGYSG NLPFMYGTET NILETHPGIT DPSVSSFSSV
201: ESDSQPVNET VLDADSSSFG FLGQIPRNFS LSDLTADFSN SSDILESYSG SAFLATDVNN LFLDPQDRRE HQGPMAPGLR RFCK
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.