Factsheet for PGSC0003DMT400076756

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079710.1.1	Tomato	nucleus	87.82	96.48
PGSC0003DMT400076729	Potato	nucleus	60.58	60.58
KRG95131	Soybean	nucleus	60.26	55.46
KRH66806	Soybean	nucleus	59.29	55.22
Bra029826.1-P	Field mustard	mitochondrion, nucleus	55.45	52.58
CDY08617	Canola	mitochondrion, nucleus	55.45	52.58
AT3G10250.5	Thale cress	mitochondrion, nucleus	54.17	52.16
Bra034101.1-P	Field mustard	mitochondrion, nucleus	54.17	52.0
CDY41330	Canola	mitochondrion, nucleus	54.49	51.99
CDY56714	Canola	mitochondrion, nucleus	54.17	51.52
CDY00915	Canola	mitochondrion, nucleus	54.81	51.51
PGSC0003DMT400081823	Potato	nucleus	50.64	49.69
GSMUA_Achr11P...	Banana	nucleus	50.0	48.0
AT5G04090.6	Thale cress	nucleus	49.04	47.52
GSMUA_Achr1P08340_001	Banana	cytosol	48.08	46.88
Os02t0137100-01	Rice	nucleus	48.08	45.59
TraesCS6A01G104900.1	Wheat	nucleus	47.12	45.37
KXG29427	Sorghum	nucleus	46.79	45.34
GSMUA_Achr10P...	Banana	nucleus	46.47	45.17
TraesCS6D01G093800.1	Wheat	nucleus	46.79	45.06
TraesCS7D01G407000.1	Wheat	nucleus	43.91	44.92
TraesCS7A01G413700.1	Wheat	nucleus	43.59	44.59
TraesCS7B01G313700.1	Wheat	nucleus	43.27	44.26
TraesCS6B01G134100.4	Wheat	extracellular	44.23	40.83
Zm00001d054004_P001	Maize	nucleus	43.27	39.59
EER90343	Sorghum	nucleus	36.54	39.58
PGSC0003DMT400061428	Potato	nucleus	12.5	38.24
HORVU6Hr1G018770.3	Barley	plastid	46.47	35.37
PGSC0003DMT400060454	Potato	cytosol	11.54	34.62
PGSC0003DMT400024865	Potato	nucleus	35.58	30.08
PGSC0003DMT400035154	Potato	cytosol	9.29	28.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400076756	EnsemblPlantsGene:PGSC0003DMG400029851	EntrezGene:102601506	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF1
PFAM:PF09713	PGSC:PGSC0003DMG400029851	RefSeq:XP_006351278.1	SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI00029538CC
UniProt:M1CXC8	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029851]

Coordinates

chr10:-:58084606..58091596

Molecular Weight (calculated)

34789.0 Da

IEP (calculated)

4.678

GRAVY (calculated)

-0.456

Length

312 amino acids

Sequence
(BLAST)

001: MSEGEAKKIS RQDIQLVQNL IERCLQLYMN QEEVIRTLLD QAKIEPGFTE LVWQKLEEEN QEFFRAYHVR LMVKDQIERF NDLLERQVEA MQMIPTQPIP
101: NGSQIRQISP NSTCQARDHT GPHVKPENVH QTVNANLSQV YTNGVSSLQP CMQGAIDVSA HARRIDASSN MLLAQSSNLG MLQGVRGGMI KSEAGYSGNL
201: PFMYGTETNI LETHPGITDP SVSSFSSVES DSQPVNETVL DADTSSFGFL GQIPRNFSLS DLTADFSNSS DILESYSGSA FLATDVNNLF LDPQDRREHQ
301: GPMAPGLRRF CK

Best Arabidopsis Sequence Match ( AT3G10250.2 )
(BLAST)

001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE

Arabidopsis Description

AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.