Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 77.5 | 76.31 |
| GSMUA_Achr10P... | Banana | nucleus | 73.75 | 73.52 |
| Os02t0137100-01 | Rice | nucleus | 58.12 | 56.53 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 56.25 | 55.56 |
| KXG29427 | Sorghum | nucleus | 55.62 | 55.28 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 55.94 | 55.25 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 50.31 | 52.79 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 49.69 | 52.13 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 49.38 | 51.8 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 52.81 | 50.0 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 50.31 | 49.69 |
| KRH66806 | Soybean | nucleus | 51.88 | 49.55 |
| CDY41330 | Canola | mitochondrion, nucleus | 50.31 | 49.24 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 50.0 | 49.23 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 50.0 | 49.23 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 50.31 | 48.94 |
| CDY56714 | Canola | mitochondrion, nucleus | 50.0 | 48.78 |
| KRG95131 | Soybean | nucleus | 51.56 | 48.67 |
| CDY08617 | Canola | mitochondrion, nucleus | 49.69 | 48.33 |
| EER90343 | Sorghum | nucleus | 43.44 | 48.26 |
| PGSC0003DMT400076756 | Potato | nucleus | 46.88 | 48.08 |
| CDY00915 | Canola | mitochondrion, nucleus | 49.38 | 47.59 |
| AT5G04090.6 | Thale cress | nucleus | 46.25 | 45.96 |
| Solyc10g079590.1.1 | Tomato | nucleus | 45.31 | 45.6 |
| PGSC0003DMT400076729 | Potato | nucleus | 44.38 | 45.51 |
| Zm00001d054004_P001 | Maize | nucleus | 47.19 | 44.28 |
| HORVU6Hr1G018770.3 | Barley | plastid | 56.25 | 43.9 |
| Solyc10g079710.1.1 | Tomato | nucleus | 38.75 | 43.66 |
| Solyc01g005640.2.1 | Tomato | nucleus | 40.94 | 43.52 |
| PGSC0003DMT400081823 | Potato | nucleus | 42.19 | 42.45 |
| GSMUA_Achr10P... | Banana | cytosol | 11.88 | 40.86 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 10.0 | 40.51 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 11.56 | 38.54 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 11.25 | 37.11 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 8.75 | 35.9 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 10.31 | 34.02 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 38.12 | 33.8 |
| GSMUA_Achr10P... | Banana | nucleus | 37.81 | 33.52 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 36.25 | 33.05 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 36.88 | 31.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P08340_001 | EnsemblPlants:GSMUA_Achr1T08340_001 | EnsemblPlantsGene:GSMUA_Achr1G08340_001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | TIGRFAMs:TIGR01589 | UniParc:UPI000295B203 | UniProt:M0RY42 | MapMan:35.2 | : |
Description
plant-specific domain TIGR01589 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G08340_001]
Coordinates
chr1:-:6417654..6426741
Molecular Weight (calculated)
35633.6 Da
IEP (calculated)
4.524
GRAVY (calculated)
-0.422
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGEVRKVS RQDIQLVQNL IERCLQLYMN QKEVVDTLSF QAKIEPSFTE LVWQKLEEEN REFFKAYHIR LILKNQILLF NKLLEKQVEL MQKACPSGVA
101: ILPIPNASHS PLLQTPSCYM SQHASTSSRP DGMFYNGDFS SDLVNGRSSE HQGNYLESDS SIVAGIMHAS TIVLSAHNSN MGRISGLSET IIKSEPNYLN
201: NSEFPFVSDN IILEAHRPIG DASGGSFSNS ELTGQPANST LPDVDTPSLG FSQIPRNFSF SDLSDDFTHC ADILENYDKS PYLPPDSNNF LDSPATEFKD
301: DTRKLDTISE GVSYDGLRSD
101: ILPIPNASHS PLLQTPSCYM SQHASTSSRP DGMFYNGDFS SDLVNGRSSE HQGNYLESDS SIVAGIMHAS TIVLSAHNSN MGRISGLSET IIKSEPNYLN
201: NSEFPFVSDN IILEAHRPIG DASGGSFSNS ELTGQPANST LPDVDTPSLG FSQIPRNFSF SDLSDDFTHC ADILENYDKS PYLPPDSNNF LDSPATEFKD
301: DTRKLDTISE GVSYDGLRSD
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.