Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 94.88 | 95.74 |
| CDY08617 | Canola | mitochondrion, nucleus | 94.58 | 95.44 |
| CDY56714 | Canola | mitochondrion, nucleus | 87.65 | 88.72 |
| CDY41330 | Canola | mitochondrion, nucleus | 87.05 | 88.38 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 86.14 | 88.27 |
| AT5G04090.6 | Thale cress | nucleus | 64.46 | 66.46 |
| KRH66806 | Soybean | nucleus | 58.13 | 57.61 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 56.02 | 57.23 |
| KRG95131 | Soybean | nucleus | 57.23 | 56.05 |
| PGSC0003DMT400076756 | Potato | nucleus | 51.51 | 54.81 |
| Solyc10g079710.1.1 | Tomato | nucleus | 43.98 | 51.41 |
| PGSC0003DMT400076729 | Potato | nucleus | 47.59 | 50.64 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 47.59 | 49.38 |
| Solyc10g079590.1.1 | Tomato | nucleus | 47.29 | 49.37 |
| GSMUA_Achr10P... | Banana | nucleus | 47.59 | 49.22 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 46.08 | 47.22 |
| Solyc01g005640.2.1 | Tomato | nucleus | 42.77 | 47.18 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 45.78 | 46.91 |
| Os02t0137100-01 | Rice | nucleus | 46.39 | 46.81 |
| GSMUA_Achr11P... | Banana | nucleus | 45.78 | 46.77 |
| KXG29427 | Sorghum | nucleus | 45.18 | 46.58 |
| PGSC0003DMT400081823 | Potato | nucleus | 43.67 | 45.6 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 40.66 | 44.26 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 40.66 | 44.26 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 40.36 | 43.93 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 43.67 | 42.9 |
| CDY02930 | Canola | nucleus | 11.45 | 40.0 |
| CDY40206 | Canola | nucleus | 11.45 | 40.0 |
| CDX76114 | Canola | nucleus | 11.45 | 40.0 |
| CDX73396 | Canola | nucleus | 11.45 | 40.0 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 10.84 | 39.56 |
| CDY11219 | Canola | cytosol | 10.84 | 39.56 |
| EER90343 | Sorghum | nucleus | 33.73 | 38.89 |
| Zm00001d054004_P001 | Maize | nucleus | 39.16 | 38.12 |
| CDY53585 | Canola | cytosol | 6.02 | 37.74 |
| HORVU6Hr1G018770.3 | Barley | plastid | 44.88 | 36.34 |
| CDY20432 | Canola | cytosol | 8.13 | 34.18 |
| CDX80017 | Canola | nucleus | 33.43 | 30.92 |
| CDY42046 | Canola | nucleus | 33.43 | 30.16 |
| CDY72004 | Canola | extracellular | 5.12 | 29.82 |
| CDY25057 | Canola | nucleus | 31.93 | 29.2 |
| CDX67857 | Canola | nucleus | 31.33 | 28.42 |
| CDY37956 | Canola | cytosol | 8.13 | 26.73 |
| CDX93395 | Canola | cytosol | 8.13 | 26.73 |
| CDX71711 | Canola | mitochondrion | 32.83 | 24.28 |
| CDY11376 | Canola | cytosol | 32.83 | 6.63 |
Protein Annotations
| EnsemblPlants:CDY00915 | EnsemblPlantsGene:GSBRNA2T00110911001 | InterPro:CHP01589_pln | ncoils:Coil | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | ProteinID:CDY00915 | ProteinID:CDY00915.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0004EB9CB5 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g42850D
Coordinates
chrLK031923:-:85546..88214
Molecular Weight (calculated)
37070.2 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.678
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVETLLE QAKIEPGFTE LVWQKLEEEN REFFNAYYLR LMVKHQIMEF NKLLEQQVRH MQQMHPTGLT
101: SIQNTNGSHI QSMNQKQLGY ASEHTDHQSL KPNAHHPMPS SLSNAYLNGS STLNTNVSPS VNMSTHARRV DTCPNMLSSQ TTTNMPPMMQ GMNGGGGGGM
201: IKSETAFTNP PSFMYGGERN NALEGHSTGR ETPIPSFSNE SNNNQPIGDT LLDAEASTFG FLGSIPRNFS LSDLTADFSQ SSEILESYDK SPFLAPDAEN
301: FLDSCDRGEY QGDNKRLDTI SEGFSYDNLG SE
101: SIQNTNGSHI QSMNQKQLGY ASEHTDHQSL KPNAHHPMPS SLSNAYLNGS STLNTNVSPS VNMSTHARRV DTCPNMLSSQ TTTNMPPMMQ GMNGGGGGGM
201: IKSETAFTNP PSFMYGGERN NALEGHSTGR ETPIPSFSNE SNNNQPIGDT LLDAEASTFG FLGSIPRNFS LSDLTADFSQ SSEILESYDK SPFLAPDAEN
301: FLDSCDRGEY QGDNKRLDTI SEGFSYDNLG SE
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.