CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80017	Canola	nucleus	60.58	75.77
CDY42046	Canola	nucleus	60.8	74.18
CDY25057	Canola	nucleus	59.24	73.28
CDX67857	Canola	nucleus	59.47	72.95
GSMUA_Achr7P14110_001	Banana	nucleus	47.88	59.56
TraesCS3B01G171500.1	Wheat	nucleus	46.77	58.82
Zm00001d039349_P002	Maize	nucleus	47.22	58.4
KXG31543	Sorghum	nucleus	46.77	58.01
TraesCS3A01G144700.2	Wheat	nucleus	46.77	57.85
TraesCS3D01G106200.1	Wheat	nucleus	45.66	57.26
TraesCS3D01G153500.1	Wheat	cytosol	46.1	57.02
TraesCS3B01G122400.1	Wheat	nucleus	45.43	56.82
TraesCS3A01G104000.1	Wheat	unclear	45.43	56.82
GSMUA_Achr10P...	Banana	nucleus	45.43	56.51
GSMUA_Achr6P05700_001	Banana	nucleus	43.43	55.56
Zm00001d008954_P002	Maize	nucleus	45.66	51.9
GSMUA_Achr6P14310_001	Banana	nucleus	42.76	51.89
Os05t0212400-01	Rice	cytosol, nucleus	40.53	51.27
Os01t0220200-01	Rice	cytosol, nucleus, plastid	12.69	47.11
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	28.29	44.25
CDY53585	Canola	cytosol	4.68	39.62
CDY20432	Canola	cytosol	6.46	36.71
CDX73396	Canola	nucleus	7.57	35.79
CDY40206	Canola	nucleus	7.57	35.79
CDY02930	Canola	nucleus	7.57	35.79
CDX76114	Canola	nucleus	7.57	35.79
CDY11219	Canola	cytosol	7.13	35.16
CDX80829	Canola	cytosol, nucleus, peroxisome	7.13	35.16
CDY56714	Canola	mitochondrion, nucleus	25.39	34.76
CDY41330	Canola	mitochondrion, nucleus	25.17	34.56
CDY72004	Canola	extracellular	4.23	33.33
CDY08617	Canola	mitochondrion, nucleus	24.28	33.13
CDY00915	Canola	mitochondrion, nucleus	24.28	32.83
CDY37956	Canola	cytosol	6.68	29.7
CDX93395	Canola	cytosol	6.68	29.7
CDY11376	Canola	cytosol	79.96	21.82

Protein Annotations

EnsemblPlants:CDX71711	EnsemblPlantsGene:GSBRNA2T00155399001	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
ProteinID:CDX71711	ProteinID:CDX71711.1	TIGRFAMs:TIGR01589	UniParc:UPI0004EF0C90	MapMan:35.2	:

Description

BnaC08g31630D

Coordinates

chrLK031795:-:93610..98552

Molecular Weight (calculated)

49378.8 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.237

Length

449 amino acids

Sequence
(BLAST)

001: MGELILHQPP LVHTKIRRSV LGKSSSSGYA ARREEIRHSD LLFRGVLIRD VEAYTALASP IKLPGCGGSF SSVAPVMFPE RLLDEFLVGG RWKLSGAKEL
101: VQSSTQVSHE NQDEHKINQS VDAPPIQDAV SVSASCNDSR KVSRQDIELV QNLIERCLQL YMNRDEVMKT LLARARIEPG FTSLVWQKLE EENADFFRAY
201: YIRLKLKKQI ILFNHLLEHQ YHLMRYPPTH VPPKISLAPI PNGMHHMSHV VTTMPMGYPV LQHPQMHPHI DAMGMSSCHV VNGVPAPANF QPLKMNSTND
301: MVIDTKVEDA TTLQVIPPNS GGMAVSPASV ASSGHFPFDA SDMVMDASVL DSAFTSEVGG EGRAGSAGDS LRSFDQIPWN FSLSDLTADL SNLGDVYVAE
401: LGGLGNYPGS PFLPSDSEIL LDSPDHEDIE EFFVDVPGPP CSNSDEEKP

Best Arabidopsis Sequence Match ( AT3G61700.2 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.