Factsheet for TraesCS1A01G126500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0212400-01	Rice	cytosol, nucleus	64.46	52.11
TraesCS3A01G144700.2	Wheat	nucleus	59.23	46.83
TraesCS3A01G104000.1	Wheat	unclear	58.19	46.52
GSMUA_Achr6P05700_001	Banana	nucleus	53.31	43.59
GSMUA_Achr7P14110_001	Banana	nucleus	52.96	42.11
GSMUA_Achr10P...	Banana	nucleus	51.92	41.27
KRH47919	Soybean	nucleus	51.57	41.23
KRH06484	Soybean	nucleus	51.92	41.05
VIT_15s0046g00990.t01	Wine grape	nucleus	52.26	40.76
KRG97168	Soybean	nucleus	50.52	40.5
PGSC0003DMT400024865	Potato	nucleus	49.83	38.75
Bra004538.1-P	Field mustard	nucleus	48.43	38.72
GSMUA_Achr6P14310_001	Banana	nucleus	49.83	38.65
CDY42046	Canola	nucleus	49.48	38.59
CDX80017	Canola	nucleus	48.08	38.44
AT3G61700.2	Thale cress	nucleus	48.43	38.19
AT2G46420.3	Thale cress	nucleus	47.74	37.74
Solyc01g010520.2.1	Tomato	nucleus	46.34	37.15
Solyc05g007270.2.1	Tomato	cytosol	51.22	36.39
CDY25057	Canola	nucleus	43.21	34.16
CDX67857	Canola	nucleus	43.55	34.15
Bra003465.1-P	Field mustard	nucleus	43.55	34.15
VIT_16s0100g00590.t01	Wine grape	nucleus	21.25	28.37
CDX71711	Canola	mitochondrion	44.25	28.29
TraesCS3A01G355400.1	Wheat	cytosol, nucleus, plastid	8.71	26.32
TraesCS1A01G287200.1	Wheat	cytosol	7.67	22.22
TraesCS6A01G104900.1	Wheat	nucleus	23.69	20.99
TraesCS7A01G413700.1	Wheat	nucleus	20.21	19.02
TraesCS4A01G101700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	6.97	13.99
CDY11376	Canola	cytosol	44.95	7.84
Bra007627.1-P	Field mustard	cytosol	44.95	7.84

Protein Annotations

EnsemblPlants:TraesCS1A01G126500.1	EnsemblPlantsGene:TraesCS1A01G126500	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
SEG:seg	TIGRFAMs:TIGR01589	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1A:-:152407743..152434315

Molecular Weight (calculated)

30477.3 Da

IEP (calculated)

4.009

GRAVY (calculated)

-0.326

Length

287 amino acids

Sequence
(BLAST)

001: MQNGQRGKCS DANLQPPVQV GDEGKTGQPK TTDEPLGDSC SFLVADDDSK KVSHEDIELL RSKDVQNLIE RCLQFYMNRG EVVRTLSTRA RIETGFTTLV
101: NNLPIGYPVL QKPGIPAAGQ PHVNAMACGP PGYHIANGMP YHPIRMSSAN GIMDNELPEA AHAATVFGTV SSEIAMSSSS GMSSNHLTFT PSELSEMDVD
201: AAAVDTAIGA DVANGGPLEI GLDSDFSLSD LSADLTNLGD LAALENYAGN PFMPSDSDIL LDSTEHDDIV EYFVDAVDGP SQSDEEK

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.