Factsheet for PGSC0003DMT400024865

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010520.2.1	Tomato	nucleus	95.12	98.04
VIT_15s0046g00990.t01	Wine grape	nucleus	79.67	79.89
Bra004538.1-P	Field mustard	nucleus	75.88	77.99
CDX80017	Canola	nucleus	75.61	77.72
CDY42046	Canola	nucleus	77.24	77.45
KRH06484	Soybean	nucleus	74.8	76.03
KRH47919	Soybean	nucleus	73.44	75.49
AT2G46420.3	Thale cress	nucleus	73.71	74.93
AT3G61700.2	Thale cress	nucleus	72.63	73.63
KRG97168	Soybean	nucleus	70.19	72.35
GSMUA_Achr7P14110_001	Banana	nucleus	68.56	70.08
GSMUA_Achr10P...	Banana	nucleus	67.75	69.25
TraesCS3B01G171500.1	Wheat	nucleus	66.4	68.63
KXG31543	Sorghum	nucleus	66.67	67.96
TraesCS3A01G144700.2	Wheat	nucleus	66.67	67.77
TraesCS3D01G106200.1	Wheat	nucleus	65.58	67.6
TraesCS3D01G153500.1	Wheat	cytosol	66.4	67.49
TraesCS3A01G104000.1	Wheat	unclear	65.31	67.13
TraesCS3B01G122400.1	Wheat	nucleus	65.04	66.85
Zm00001d039349_P002	Maize	nucleus	65.31	66.39
GSMUA_Achr6P05700_001	Banana	nucleus	59.89	62.96
Zm00001d008954_P002	Maize	nucleus	65.04	60.76
Os01t0220200-01	Rice	cytosol, nucleus, plastid	19.78	60.33
GSMUA_Achr6P14310_001	Banana	nucleus	60.43	60.27
Os05t0212400-01	Rice	cytosol, nucleus	56.91	59.15
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	38.75	49.83
PGSC0003DMT400060454	Potato	cytosol	10.3	36.54
PGSC0003DMT400076756	Potato	nucleus	30.08	35.58
PGSC0003DMT400061428	Potato	nucleus	9.76	35.29
PGSC0003DMT400035154	Potato	cytosol	9.49	34.31
PGSC0003DMT400076729	Potato	nucleus	28.46	33.65
PGSC0003DMT400081823	Potato	nucleus	27.64	32.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400024865	EnsemblPlantsGene:PGSC0003DMG400009613	EntrezGene:102583277	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9
PFAM:PF09713	PGSC:PGSC0003DMG400009613	RefSeq:XP_006364944.1	RefSeq:XP_015159692.1	RefSeq:XP_015159693.1	SEG:seg
TIGRFAMs:TIGR01589	UniParc:UPI0002956C0A	UniProt:M1AKQ3	MapMan:35.2	:	:

Description

Uncharacterized plant-specific domain TIGR01589 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009613]

Coordinates

chr1:+:12836248..12844169

Molecular Weight (calculated)

40094.9 Da

IEP (calculated)

4.210

GRAVY (calculated)

-0.383

Length

369 amino acids

Sequence
(BLAST)

001: MKTTQDLQNT TEKQSSTQAS HEAQSDQQNN ATDIPVADSG SVSASGNDNR KVSREDIELV QNLIERCLQL YMNKDEVVKT LLNRARIDPG FTALVWQKLE
101: EENADFFRAY YIRLKLKKQI ILFNHLLEHQ YHLMKYPVPP KVPLTPMQNG INTMPVNNLP MGYPVLQQPP HLAAGQPHFD PMGMSSCHVV NGVPAPSNYH
201: PMQMNSGNDM VVETSASDVA PAVPPSNAMS DMPVSPASVA SSGHFPFTAS EISGMGIDTS VLDSSFPSDV ASSVGLQLPP DNGVGNSRDL LRSLDQIPWD
301: FSLSDLTADL SNLGDLGSLG NYPGSPFLPS DSDILLDSPE QEDIVEEFFV DVEAAPGPAA CPQSDEEKS

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.