Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g005730.2.1 | Tomato | nucleus | 89.22 | 88.35 |
| Os03t0280400-01 | Rice | cytosol, nucleus, plastid | 50.0 | 65.38 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 59.8 | 64.89 |
| Bra005731.1-P | Field mustard | cytosol | 55.88 | 62.64 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 55.88 | 62.64 |
| CDY11219 | Canola | cytosol | 55.88 | 62.64 |
| AT5G02580.1 | Thale cress | cytosol | 55.88 | 62.64 |
| Zm00001d038387_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 59.8 | 61.62 |
| Os05t0462000-00 | Rice | cytosol | 60.78 | 60.78 |
| EER95072 | Sorghum | cytosol, nucleus, plastid | 47.06 | 60.76 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 47.06 | 60.76 |
| CDY72004 | Canola | extracellular | 33.33 | 59.65 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 55.88 | 59.38 |
| KRH19744 | Soybean | cytosol | 55.88 | 59.38 |
| HORVU1Hr1G071910.1 | Barley | cytosol | 57.84 | 59.0 |
| Zm00001d047779_P001 | Maize | nucleus | 46.08 | 58.02 |
| TraesCS1D01G286100.1 | Wheat | cytosol | 54.9 | 57.14 |
| TraesCS1B01G296600.1 | Wheat | cytosol | 54.9 | 57.14 |
| EES19655 | Sorghum | cytosol | 56.86 | 56.86 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 53.92 | 56.7 |
| TraesCS1A01G287200.1 | Wheat | cytosol | 54.9 | 56.57 |
| HORVU4Hr1G023250.1 | Barley | extracellular | 48.04 | 56.32 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 44.12 | 56.25 |
| GSMUA_Achr10P... | Banana | cytosol | 50.98 | 55.91 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 51.96 | 54.64 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 49.02 | 52.63 |
| TraesCS3D01G349400.1 | Wheat | cytosol, nucleus, plastid | 49.02 | 52.63 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 40.2 | 52.56 |
| TraesCS3B01G388300.1 | Wheat | cytosol, nucleus, plastid | 49.02 | 52.08 |
| PGSC0003DMT400060454 | Potato | cytosol | 52.94 | 51.92 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 49.02 | 49.02 |
| HORVU3Hr1G087010.1 | Barley | cytosol, nucleus, plastid | 48.04 | 49.0 |
| Zm00001d012431_P001 | Maize | cytosol, nucleus, plastid | 47.06 | 46.6 |
| HORVU4Hr1G058560.1 | Barley | cytosol | 51.96 | 42.74 |
| TraesCS4B01G202900.2 | Wheat | cytosol | 36.27 | 38.14 |
| TraesCS4A01G101700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.0 | 35.66 |
| TraesCS4D01G203800.1 | Wheat | mitochondrion | 51.96 | 33.76 |
| PGSC0003DMT400035154 | Potato | cytosol | 30.39 | 30.39 |
| EES01725 | Sorghum | cytosol, nucleus, plastid | 50.0 | 29.82 |
| Zm00001d042940_P001 | Maize | nucleus | 48.04 | 25.65 |
| PGSC0003DMT400076729 | Potato | nucleus | 39.22 | 12.82 |
| PGSC0003DMT400076756 | Potato | nucleus | 38.24 | 12.5 |
| PGSC0003DMT400081823 | Potato | nucleus | 35.29 | 11.32 |
| PGSC0003DMT400024865 | Potato | nucleus | 35.29 | 9.76 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061428 | EnsemblPlantsGene:PGSC0003DMG400023905 | EntrezGene:102590633 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 |
| PFAM:PF09713 | PGSC:PGSC0003DMG400023905 | RefSeq:XP_006345666.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI00029516E8 |
| UniProt:M1C7G9 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023905]
Coordinates
chr9:-:7475331..7477073
Molecular Weight (calculated)
11876.1 Da
IEP (calculated)
5.991
GRAVY (calculated)
-0.754
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSSQYIH MVQHLIEKCI IFNMSQEECM DALSKHANIQ PIITSTVWKE LEKENKEFFE AYNKKRGEAK ISASIHDELE MTRQRIHNIM LDSSSNKDSN
101: DK
101: DK
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.