Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 65.05 | 70.53 |
| TraesCS3B01G388300.1 | Wheat | cytosol, nucleus, plastid | 64.08 | 68.75 |
| TraesCS3D01G349400.1 | Wheat | cytosol, nucleus, plastid | 63.11 | 68.42 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 62.14 | 62.75 |
| HORVU3Hr1G087010.1 | Barley | cytosol, nucleus, plastid | 59.22 | 61.0 |
| Zm00001d038387_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.34 | 57.58 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 51.46 | 54.64 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 41.75 | 54.43 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 50.49 | 54.17 |
| KRG95854 | Soybean | cytosol | 48.54 | 53.76 |
| KRH67570 | Soybean | cytosol | 48.54 | 53.76 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 49.51 | 52.58 |
| GSMUA_Achr10P... | Banana | cytosol | 46.6 | 51.61 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 46.6 | 51.06 |
| Zm00001d047779_P001 | Maize | nucleus | 38.84 | 49.38 |
| CDY72004 | Canola | extracellular | 27.18 | 49.12 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 37.86 | 48.75 |
| Bra005731.1-P | Field mustard | cytosol | 42.72 | 48.35 |
| CDY11219 | Canola | cytosol | 42.72 | 48.35 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 42.72 | 48.35 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 27.18 | 48.28 |
| KRH19744 | Soybean | cytosol | 44.66 | 47.92 |
| AT5G02580.1 | Thale cress | cytosol | 41.75 | 47.25 |
| PGSC0003DMT400061428 | Potato | nucleus | 46.6 | 47.06 |
| Zm00001d042940_P001 | Maize | nucleus | 82.52 | 44.5 |
| EES01725 | Sorghum | cytosol, nucleus, plastid | 73.79 | 44.44 |
| Solyc09g005730.2.1 | Tomato | nucleus | 43.69 | 43.69 |
| Solyc10g084600.1.1 | Tomato | nucleus | 40.78 | 38.53 |
| Zm00001d039349_P002 | Maize | nucleus | 34.95 | 9.92 |
| Zm00001d008954_P002 | Maize | nucleus | 34.95 | 9.11 |
| Zm00001d054004_P001 | Maize | nucleus | 29.13 | 8.8 |
Protein Annotations
| EnsemblPlants:Zm00001d012431_P001 | EnsemblPlants:Zm00001d012431_T001 | EnsemblPlantsGene:Zm00001d012431 | EntrezGene:103636516 | InterPro:CHP01589_pln | PANTHER:PTHR31871 |
| PANTHER:PTHR31871:SF8 | PFAM:PF09713 | ProteinID:AQK99529.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0004DE81CC |
| UniProt:A0A1D6G8Q5 | MapMan:35.2 | : | : | : | : |
Description
plant-specific domain TIGR01589 family protein expressed
Coordinates
chr8:-:174365005..174365895
Molecular Weight (calculated)
11682.4 Da
IEP (calculated)
4.357
GRAVY (calculated)
-0.919
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDDAASSS PAASYVRLVQ HLIEKCICYK LNKEECMETL EKHAKVMPVI TSTAVWKELE KENREFFETY KKYLGQESAL QKNPSDGQEQ PSSASKSSDD
101: DDD
101: DDD
1: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVWRGLQREN KDFFETYGHF VSPRPFLSKR LWDQMSSSNC
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.