Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012431_P001 | Maize | cytosol, nucleus, plastid | 44.5 | 82.52 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 36.65 | 73.68 |
| TraesCS3B01G388300.1 | Wheat | cytosol, nucleus, plastid | 36.13 | 71.88 |
| TraesCS3D01G349400.1 | Wheat | cytosol, nucleus, plastid | 35.6 | 71.58 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 35.6 | 66.67 |
| HORVU3Hr1G087010.1 | Barley | cytosol, nucleus, plastid | 34.03 | 65.0 |
| EES01725 | Sorghum | cytosol, nucleus, plastid | 58.12 | 64.91 |
| Zm00001d038387_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.37 | 58.59 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 24.08 | 58.23 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 28.27 | 55.67 |
| KRG95854 | Soybean | cytosol | 26.7 | 54.84 |
| KRH67570 | Soybean | cytosol | 26.7 | 54.84 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 26.18 | 53.19 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 26.7 | 53.12 |
| Zm00001d047779_P001 | Maize | nucleus | 22.51 | 53.09 |
| GSMUA_Achr10P... | Banana | cytosol | 25.65 | 52.69 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 26.7 | 52.58 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 21.99 | 52.5 |
| CDY72004 | Canola | extracellular | 15.18 | 50.88 |
| Bra005731.1-P | Field mustard | cytosol | 24.08 | 50.55 |
| CDY11219 | Canola | cytosol | 24.08 | 50.55 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 24.08 | 50.55 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 15.18 | 50.0 |
| KRH19744 | Soybean | cytosol | 25.13 | 50.0 |
| AT5G02580.1 | Thale cress | cytosol | 23.56 | 49.45 |
| PGSC0003DMT400061428 | Potato | nucleus | 25.65 | 48.04 |
| Solyc09g005730.2.1 | Tomato | nucleus | 24.08 | 44.66 |
| Solyc10g084600.1.1 | Tomato | nucleus | 23.04 | 40.37 |
| Zm00001d039349_P002 | Maize | nucleus | 23.04 | 12.12 |
| Zm00001d008954_P002 | Maize | nucleus | 23.04 | 11.14 |
| Zm00001d054004_P001 | Maize | nucleus | 18.85 | 10.56 |
Protein Annotations
| EMBL:BT037512 | EMBL:EU958242 | EnsemblPlants:Zm00001d042940_P001 | EnsemblPlants:Zm00001d042940_T001 | EnsemblPlantsGene:Zm00001d042940 | EntrezGene:100275821 |
| InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF8 | PFAM:PF09713 | ProteinID:ONM36584.1 | ProteinID:ONM36585.1 |
| SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI00017B70B3 | UniProt:B4FK74 | MapMan:35.2 | : |
Description
plant-specific domain TIGR01589 family protein expressed
Coordinates
chr3:-:184600405..184602349
Molecular Weight (calculated)
21490.1 Da
IEP (calculated)
7.906
GRAVY (calculated)
-1.274
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDASSSPA ASYIRLVQHL IEKCICYKLN KEECMETLEK HAKIMPVVTS TVWKELEKEN REFFETYKKD RGGGGGGPRN LQEAAAAGHH PPPRLQVQQS
101: CCSQEPALEQ KKHPPSDGVQ EHNRVVVEKE KRKQDPPSAS ASADGQEQRV VEKKEKRKDP PSDGQERRVM AKENSRKDPS ASSKRSDKDN D
101: CCSQEPALEQ KKHPPSDGVQ EHNRVVVEKE KRKQDPPSAS ASADGQEQRV VEKKEKRKDP PSDGQERRVM AKENSRKDPS ASSKRSDKDN D
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.