Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95072 | Sorghum | cytosol, nucleus, plastid | 93.83 | 96.2 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 90.12 | 91.25 |
| Os03t0280400-01 | Rice | cytosol, nucleus, plastid | 81.48 | 84.62 |
| HORVU4Hr1G023250.1 | Barley | extracellular | 65.43 | 60.92 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 53.09 | 55.13 |
| TraesCS4B01G202900.2 | Wheat | cytosol | 64.2 | 53.61 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 37.04 | 51.72 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 59.26 | 51.06 |
| HORVU4Hr1G058560.1 | Barley | cytosol | 76.54 | 50.0 |
| AT5G02580.1 | Thale cress | cytosol | 55.56 | 49.45 |
| KRG95854 | Soybean | cytosol | 55.56 | 48.39 |
| KRH67570 | Soybean | cytosol | 55.56 | 48.39 |
| CDY11219 | Canola | cytosol | 54.32 | 48.35 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 54.32 | 48.35 |
| Bra005731.1-P | Field mustard | cytosol | 54.32 | 48.35 |
| CDY72004 | Canola | extracellular | 33.33 | 47.37 |
| KRH19744 | Soybean | cytosol | 55.56 | 46.88 |
| Solyc09g005730.2.1 | Tomato | nucleus | 59.26 | 46.6 |
| PGSC0003DMT400061428 | Potato | nucleus | 58.02 | 46.08 |
| Zm00001d038387_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.32 | 44.44 |
| TraesCS4A01G101700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 77.78 | 44.06 |
| Solyc10g084600.1.1 | Tomato | nucleus | 56.79 | 42.2 |
| TraesCS4D01G203800.1 | Wheat | mitochondrion | 76.54 | 39.49 |
| Zm00001d012431_P001 | Maize | cytosol, nucleus, plastid | 49.38 | 38.84 |
| Zm00001d042940_P001 | Maize | nucleus | 53.09 | 22.51 |
| Zm00001d039349_P002 | Maize | nucleus | 38.27 | 8.54 |
| Zm00001d054004_P001 | Maize | nucleus | 35.8 | 8.5 |
| Zm00001d008954_P002 | Maize | nucleus | 38.27 | 7.85 |
Protein Annotations
| EMBL:BT035900 | EMBL:EU961046 | EnsemblPlants:Zm00001d047779_P001 | EnsemblPlants:Zm00001d047779_T001 | EnsemblPlantsGene:Zm00001d047779 | EntrezGene:100282477 |
| InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 | ProteinID:AQL07587.1 | TIGRFAMs:TIGR01589 |
| UniParc:UPI00017B717E | UniProt:B4FFL2 | MapMan:35.2 | : | : | : |
Description
Whole genome shotgun sequence of line PN40024 scaffold_36.assembly12x (Fragment)
Coordinates
chr9:-:141540110..141541136
Molecular Weight (calculated)
9247.9 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.641
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MAPGAGDDSD PASYIHTVQH LIERCMTFGM SMEECMEALA KRADVQPVVT STVWKELEKE NKEFFDKYRQ WISEKRSGST S
1: MRHSSPAVYI HLVQHMIETC LTFNMSKEEC MEALSENANI NPIITSTVWK ELVKENKDFF ETYEQKLMKK ESMSEEETNQ LIQNIISL
Arabidopsis Description
Plant protein 1589 of unknown function [Source:TAIR;Acc:AT3G28990]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.