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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • cytosol 1
  • nucleus 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH19744 Soybean cytosol 59.63 67.71
VIT_08s0040g02650.t01 Wine grape nucleus 55.96 64.89
Solyc09g005730.2.1 Tomato nucleus 59.63 63.11
GSMUA_Achr9P03160_001 Banana cytosol 44.95 62.03
Bra005731.1-P Field mustard cytosol 50.46 60.44
CDX80829 Canola cytosol, nucleus, peroxisome 50.46 60.44
CDY11219 Canola cytosol 50.46 60.44
AT5G02580.1 Thale cress cytosol 50.46 60.44
Os03t0280400-01 Rice cytosol, nucleus, plastid 43.12 60.26
CDY72004 Canola extracellular 31.19 59.65
EER95072 Sorghum cytosol, nucleus, plastid 43.12 59.49
Zm00001d047779_P001 Maize nucleus 42.2 56.79
Zm00001d028675_P001 Maize cytosol, nucleus, plastid 41.28 56.25
GSMUA_Achr2P16150_001 Banana cytosol 49.54 56.25
Os05t0462000-00 Rice cytosol 52.29 55.88
GSMUA_Achr4P30540_001 Banana cytosol, nucleus, plastid 49.54 55.67
HORVU1Hr1G071910.1 Barley cytosol 50.46 55.0
GSMUA_Achr9P28360_001 Banana cytosol 48.62 54.64
Zm00001d038387_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 49.54 54.55
GSMUA_Achr7P15290_001 Banana cytosol 38.53 53.85
TraesCS1B01G296600.1 Wheat cytosol 47.71 53.06
TraesCS1D01G286100.1 Wheat cytosol 47.71 53.06
TraesCS1A01G287200.1 Wheat cytosol 47.71 52.53
HORVU4Hr1G023250.1 Barley extracellular 41.28 51.72
GSMUA_Achr10P... Banana cytosol 44.04 51.61
EES19655 Sorghum cytosol 47.71 50.98
Os01t0837600-01 Rice cytosol, nucleus, plastid 46.79 50.0
Solyc05g054750.2.1 Tomato cytosol 41.28 50.0
TraesCS3A01G355400.1 Wheat cytosol, nucleus, plastid 42.2 48.42
TraesCS3D01G349400.1 Wheat cytosol, nucleus, plastid 41.28 47.37
TraesCS3B01G388300.1 Wheat cytosol, nucleus, plastid 41.28 46.88
HORVU3Hr1G087010.1 Barley cytosol, nucleus, plastid 40.37 44.0
Zm00001d012431_P001 Maize cytosol, nucleus, plastid 38.53 40.78
HORVU4Hr1G058560.1 Barley cytosol 45.87 40.32
TraesCS4B01G202900.2 Wheat cytosol 33.95 38.14
TraesCS4A01G101700.1 Wheat cytosol, mitochondrion, nucleus, plastid 46.79 35.66
TraesCS4D01G203800.1 Wheat mitochondrion 46.79 32.48
Solyc05g005230.2.1 Tomato cytosol 27.52 29.13
EES01725 Sorghum cytosol, nucleus, plastid 44.04 28.07
Zm00001d042940_P001 Maize nucleus 40.37 23.04
Solyc10g079590.1.1 Tomato nucleus 31.19 10.69
Solyc01g005640.2.1 Tomato nucleus 29.36 10.63
Solyc01g010520.2.1 Tomato nucleus 33.03 10.06
Solyc05g007270.2.1 Tomato cytosol 34.86 9.41
Solyc10g079710.1.1 Tomato nucleus 23.85 9.15
Protein Annotations
EnsemblPlants:Solyc10g084600.1.1EnsemblPlantsGene:Solyc10g084600.1InterPro:CHP01589_plnPANTHER:PTHR31871PANTHER:PTHR31871:SF3PFAM:PF09713
SEG:segTIGRFAMs:TIGR01589UniParc:UPI000276A3FDUniProt:K4D3P4MapMan:35.2:
Description
No Description!
Coordinates
chr10:-:64058320..64060213
Molecular Weight (calculated)
12841.2 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.852
Length
109 amino acids
Sequence
(BLAST)
001: MGDSSAQYIH LVHRLIEECL LFNMSREECM EALSKHANIQ PVITSTVWKE LEKENKEFFK SYKKKDEDEE STSINNNNNN NNIIESKVEI TRQRIHNLLL
101: NSQLSKYKP
Best Arabidopsis Sequence Match ( AT3G55240.1 )
(BLAST)
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.