Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95072 | Sorghum | cytosol, nucleus, plastid | 85.9 | 84.81 |
| Zm00001d047779_P001 | Maize | nucleus | 84.62 | 81.48 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 80.77 | 78.75 |
| HORVU4Hr1G023250.1 | Barley | extracellular | 76.92 | 68.97 |
| HORVU4Hr1G058560.1 | Barley | cytosol | 89.74 | 56.45 |
| TraesCS4B01G202900.2 | Wheat | cytosol | 67.95 | 54.64 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 53.85 | 53.85 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 64.1 | 53.19 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 38.46 | 51.72 |
| TraesCS4A01G101700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 92.31 | 50.35 |
| PGSC0003DMT400061428 | Potato | nucleus | 65.38 | 50.0 |
| KRG95854 | Soybean | cytosol | 58.97 | 49.46 |
| KRH67570 | Soybean | cytosol | 58.97 | 49.46 |
| Solyc09g005730.2.1 | Tomato | nucleus | 64.1 | 48.54 |
| KRH19744 | Soybean | cytosol | 57.69 | 46.88 |
| Bra005731.1-P | Field mustard | cytosol | 53.85 | 46.15 |
| CDY11219 | Canola | cytosol | 53.85 | 46.15 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 53.85 | 46.15 |
| AT5G02580.1 | Thale cress | cytosol | 53.85 | 46.15 |
| CDY72004 | Canola | extracellular | 33.33 | 45.61 |
| Os05t0462000-00 | Rice | cytosol | 58.97 | 45.1 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 58.97 | 45.1 |
| TraesCS4D01G203800.1 | Wheat | mitochondrion | 89.74 | 44.59 |
| Solyc10g084600.1.1 | Tomato | nucleus | 60.26 | 43.12 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 24.36 | 15.7 |
| Os02t0137100-01 | Rice | nucleus | 39.74 | 9.42 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 42.31 | 9.3 |
Protein Annotations
| EMBL:AK063845 | EnsemblPlants:Os03t0280400-01 | EnsemblPlantsGene:Os03g0280400 | EntrezGene:4332439 | InterPro:CHP01589_pln | ncoils:Coil |
| PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 | ProteinID:ABF95301.1 | ProteinID:BAF11651.1 | ProteinID:BAS83563.1 |
| ProteinID:EAZ26474.1 | RefSeq:XP_015629400.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0000DB41BA | UniProt:Q10N71 | MapMan:35.2 |
Description
Similar to plant-specific domain TIGR01589 family protein. (Os03t0280400-01)
Coordinates
chr3:+:9575359..9576627
Molecular Weight (calculated)
8909.7 Da
IEP (calculated)
5.103
GRAVY (calculated)
-0.526
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MALGDDSPAS YIHMVQHLIE KCMTFGMSME ECMETLSKRA DVQPVVTSTV WKELEKENKE FFDKYKQLRS EKGGVSSS
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.