Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0280400-01 | Rice | cytosol, nucleus, plastid | 50.35 | 92.31 |
| TraesCS4D01G203800.1 | Wheat | mitochondrion | 94.41 | 85.99 |
| HORVU4Hr1G023250.1 | Barley | extracellular | 49.65 | 81.61 |
| EER95072 | Sorghum | cytosol, nucleus, plastid | 44.76 | 81.01 |
| Zm00001d047779_P001 | Maize | nucleus | 44.06 | 77.78 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 41.96 | 75.0 |
| HORVU4Hr1G058560.1 | Barley | cytosol | 63.64 | 73.39 |
| TraesCS4B01G202900.2 | Wheat | cytosol | 40.56 | 59.79 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 36.36 | 55.32 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 22.38 | 55.17 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 29.37 | 53.85 |
| KRG95854 | Soybean | cytosol | 34.97 | 53.76 |
| KRH67570 | Soybean | cytosol | 34.97 | 53.76 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 35.66 | 53.68 |
| KRH19744 | Soybean | cytosol | 34.27 | 51.04 |
| TraesCS1A01G287200.1 | Wheat | cytosol | 34.97 | 50.51 |
| PGSC0003DMT400061428 | Potato | nucleus | 35.66 | 50.0 |
| Solyc09g005730.2.1 | Tomato | nucleus | 34.97 | 48.54 |
| CDY72004 | Canola | extracellular | 18.88 | 47.37 |
| AT5G02580.1 | Thale cress | cytosol | 30.07 | 47.25 |
| CDY11219 | Canola | cytosol | 30.07 | 47.25 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 30.07 | 47.25 |
| Bra005731.1-P | Field mustard | cytosol | 30.07 | 47.25 |
| Solyc10g084600.1.1 | Tomato | nucleus | 35.66 | 46.79 |
| TraesCS3A01G104000.1 | Wheat | unclear | 22.38 | 8.91 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 18.88 | 8.85 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 19.58 | 8.64 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 21.68 | 8.54 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 13.99 | 6.97 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G101700.1 | EnsemblPlantsGene:TraesCS4A01G101700 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 |
| SEG:seg | TIGRFAMs:TIGR01589 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:114142037..114142735
Molecular Weight (calculated)
16221.1 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.816
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAQGAGGR RGVLIHGACI NRFLPRRLCT PYHHTTPYTH GSSDYDYDRG RGRRYNMALG DDSPASYIRM VHHLIEKCMT FGMSMEECME ALSKRADVQP
101: VVTSTVWKEL EKENKEFFDR YNKQLRSEKG GRSSCSSSSD SSS
101: VVTSTVWKEL EKENKEFFDR YNKQLRSEKG GRSSCSSSSD SSS
1: MRHSSPAVYI HLVQHMIETC LTFNMSKEEC MEALSENANI NPIITSTVWK ELVKENKDFF ETYEQKLMKK ESMSEEETNQ LIQNIISL
Arabidopsis Description
Plant protein 1589 of unknown function [Source:TAIR;Acc:AT3G28990]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.