Factsheet for TraesCS3A01G104000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G106200.1	Wheat	nucleus	98.33	98.6
TraesCS3B01G122400.1	Wheat	nucleus	98.33	98.33
TraesCS3A01G144700.2	Wheat	nucleus	93.31	92.29
KXG31543	Sorghum	nucleus	87.47	86.74
Zm00001d039349_P002	Maize	nucleus	86.63	85.67
Zm00001d008954_P002	Maize	nucleus	86.07	78.23
Os01t0220200-01	Rice	cytosol, nucleus, plastid	25.07	74.38
GSMUA_Achr7P14110_001	Banana	nucleus	68.52	68.14
GSMUA_Achr10P...	Banana	nucleus	67.41	67.04
GSMUA_Achr6P05700_001	Banana	nucleus	64.07	65.53
PGSC0003DMT400024865	Potato	nucleus	67.13	65.31
KRH06484	Soybean	nucleus	66.02	65.29
KRH47919	Soybean	nucleus	65.18	65.18
VIT_15s0046g00990.t01	Wine grape	nucleus	66.57	64.95
CDY42046	Canola	nucleus	66.3	64.67
Bra004538.1-P	Field mustard	nucleus	64.62	64.62
Solyc01g010520.2.1	Tomato	nucleus	64.35	64.53
CDX80017	Canola	nucleus	64.35	64.35
AT2G46420.3	Thale cress	nucleus	63.23	62.53
KRG97168	Soybean	nucleus	62.12	62.29
GSMUA_Achr6P14310_001	Banana	nucleus	64.07	62.16
AT3G61700.2	Thale cress	nucleus	62.12	61.26
Solyc05g007270.2.1	Tomato	cytosol	66.3	58.91
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	46.52	58.19
CDX67857	Canola	nucleus	57.38	56.28
Bra003465.1-P	Field mustard	nucleus	57.38	56.28
VIT_16s0100g00590.t01	Wine grape	nucleus	33.7	56.28
CDY25057	Canola	nucleus	56.27	55.65
CDX71711	Canola	mitochondrion	56.82	45.43
TraesCS3A01G355400.1	Wheat	cytosol, nucleus, plastid	10.86	41.05
TraesCS6A01G104900.1	Wheat	nucleus	31.48	34.88
TraesCS1A01G287200.1	Wheat	cytosol	9.19	33.33
TraesCS7A01G413700.1	Wheat	nucleus	27.86	32.79
TraesCS4A01G101700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	8.91	22.38
Bra007627.1-P	Field mustard	cytosol	57.94	12.64
CDY11376	Canola	cytosol	57.38	12.52

Protein Annotations

EnsemblPlants:TraesCS3A01G104000.1	EnsemblPlantsGene:TraesCS3A01G104000	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
SEG:seg	TIGRFAMs:TIGR01589	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3A:-:67310469..67314079

Molecular Weight (calculated)

39129.1 Da

IEP (calculated)

4.232

GRAVY (calculated)

-0.437

Length

359 amino acids

Sequence
(BLAST)

001: MKDSQDIQST TELQMSPQGT NEVQSNQLNT MATDAPAGDP GSLTVASNDN RKVSREDIEL VQNLIERCLQ LYMTKGEVVR TLSSRARIEP GFTTLVWQKL
101: EEENPEFFRA YYIRLKLKRQ IILFNHLLQH QCNLMKYPAH PNVPLAPMQN GMHPMPVNNL PMGYPVLQQP LMPAPGQPHI DPMVCGLSSG HMVNGIPAPG
201: GYQPIRMNSG NDMVVDNGAP EVGHNGAMSS EMAVSPSSAA SSNHAPFTPS EIPGMAMDTS MLDSAFGSDI GNTEPLQLGP DGSSRDSIRS LGQLWNFSLS
301: DLTADLTSLG DLEALENYEG TPFLPSDSDL LLDSPDHNDD IVEYFADAIN GTQSDEEKS

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.