Factsheet for VIT_16s0100g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0220200-01	Rice	cytosol, nucleus, plastid	28.37	50.41
VIT_15s0046g00990.t01	Wine grape	nucleus	77.21	45.11
CDY42046	Canola	nucleus	66.51	38.86
AT3G61700.2	Thale cress	nucleus	65.58	38.74
Bra004538.1-P	Field mustard	nucleus	64.65	38.72
CDX80017	Canola	nucleus	64.19	38.44
AT2G46420.3	Thale cress	nucleus	63.72	37.74
GSMUA_Achr7P14110_001	Banana	nucleus	61.4	36.57
GSMUA_Achr10P...	Banana	nucleus	60.0	35.73
VIT_16s0050g02580.t01	Wine grape	nucleus, plastid	59.53	35.65
VIT_01s0127g00340.t01	Wine grape	cytosol	15.81	34.34
TraesCS3A01G104000.1	Wheat	unclear	56.28	33.7
TraesCS3D01G106200.1	Wheat	nucleus	55.81	33.52
KXG31543	Sorghum	nucleus	56.28	33.43
Zm00001d039349_P002	Maize	nucleus	56.28	33.33
VIT_00s0317g00020.t01	Wine grape	nucleus	14.42	33.33
GSMUA_Achr6P14310_001	Banana	nucleus	57.21	33.24
TraesCS3B01G171500.1	Wheat	nucleus	54.88	33.05
VIT_08s0040g02650.t01	Wine grape	nucleus	14.42	32.98
TraesCS3B01G122400.1	Wheat	nucleus	54.88	32.87
TraesCS3A01G144700.2	Wheat	nucleus	54.88	32.51
GSMUA_Achr6P05700_001	Banana	nucleus	53.02	32.48
TraesCS3D01G153500.1	Wheat	cytosol	54.42	32.23
Zm00001d008954_P002	Maize	nucleus	58.14	31.65
Os05t0212400-01	Rice	cytosol, nucleus	51.63	31.27
VIT_14s0036g00440.t01	Wine grape	nucleus	13.95	30.3
VIT_00s0317g00010.t01	Wine grape	cytosol	7.91	29.31
VIT_00s0317g00030.t01	Wine grape	nucleus	14.42	28.18
VIT_08s0007g05400.t01	Wine grape	mitochondrion, nucleus	35.81	23.69
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	28.37	21.25

Protein Annotations

ArrayExpress:VIT_16s0100g00590	EMBL:FN596000	EnsemblPlants:VIT_16s0100g00590.t01	EnsemblPlantsGene:VIT_16s0100g00590	InterPro:CHP01589_pln	PANTHER:PTHR31871
PANTHER:PTHR31871:SF9	PFAM:PF09713	ProteinID:CBI31827	ProteinID:CBI31827.3	TIGRFAMs:TIGR01589	UniParc:UPI0001BE4026
UniProt:D7TMV4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr16:+:16082631..16085047

Molecular Weight (calculated)

24298.9 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.362

Length

215 amino acids

Sequence
(BLAST)

001: MKTLQSAQEI QSSTQVSHES QSDHQNNTAE APVADSGSIC ISSNDSRKVS REDIELVQNL IERCLQLYMN RDEVVKTLLS RARIDPGFTT LVWQKLEEEN
101: ADFFRAYYIR LKLKKQIILF NHLLEHQAHL TNYHVSPKVP LAPIQNGIHP MPGKNDNRTS YSLLVSLSGR SLWSLPSNDS RSLQPPCCSF VSYGGLQSGP
201: LRVHFVLVFM ESSLT

Best Arabidopsis Sequence Match ( AT3G61700.1 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.