Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 69.08 | 67.39 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 35.65 | 59.53 |
| VIT_00s0317g00020.t01 | Wine grape | nucleus | 9.75 | 37.63 |
| VIT_14s0036g00440.t01 | Wine grape | nucleus | 9.75 | 35.35 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 9.19 | 35.11 |
| VIT_00s0317g00030.t01 | Wine grape | nucleus | 10.59 | 34.55 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 30.64 | 33.85 |
| VIT_01s0127g00340.t01 | Wine grape | cytosol | 8.91 | 32.32 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 5.01 | 31.03 |
Protein Annotations
| EntrezGene:100257023 | wikigene:100257023 | MapMan:35.2 | ProteinID:CBI22540 | ProteinID:CBI22540.3 | InterPro:CHP01589_pln |
| UniProt:E0CUJ1 | EMBL:FN595243 | EntrezGene:LOC100257023 | wikigene:LOC100257023 | PFAM:PF09713 | PANTHER:PTHR31871 |
| PANTHER:PTHR31871:SF9 | TIGR:TC56683 | TIGRFAMs:TIGR01589 | UniParc:UPI0001BE1FAB | ArrayExpress:VIT_16s0050g02580 | EnsemblPlantsGene:VIT_16s0050g02580 |
| EnsemblPlants:VIT_16s0050g02580.t01 | unigene:Vvi.17635 | RefSeq:XP_002269245 | RefSeq:XP_002269245.2 | RefSeq:XP_010662576.1 | SEG:seg |
Description
No Description!
Coordinates
chr16:-:19553555..19562135
Molecular Weight (calculated)
39041.8 Da
IEP (calculated)
4.574
GRAVY (calculated)
-0.350
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKLQGSAVK QASTQISHEA QSDQQNSTSE GPVVDSGSVS SSNNETRKVS HQDIEFVQNL IERCLQLYMN RDEVVKTLST RARIEPGFTT LVWHKLEEEN
101: ADFFKAYNIR LELKRQIIVF NQLLEHQYYL MNHPVPPNVP LAPIQNGIHP MPVNNLPMGY PVLQQPPLPA THINSMSCSM SSSRVVKGIP ASGNFHPIQM
201: NAANDVLLDR TASDPVPGIP TAGVKSEVAS SPPSVASNGH FSFAPEISGM SVDASTLHST FTSDVSSSEG LQLGPDGGTG NLRESFLSLA HIPWSVSLTD
301: LTVDLPNLED IGALGNYSGS PFLQSDILLD SPEQNDLVEE FFVDNVPGPD SQSDEEKKP
101: ADFFKAYNIR LELKRQIIVF NQLLEHQYYL MNHPVPPNVP LAPIQNGIHP MPVNNLPMGY PVLQQPPLPA THINSMSCSM SSSRVVKGIP ASGNFHPIQM
201: NAANDVLLDR TASDPVPGIP TAGVKSEVAS SPPSVASNGH FSFAPEISGM SVDASTLHST FTSDVSSSEG LQLGPDGGTG NLRESFLSLA HIPWSVSLTD
301: LTVDLPNLED IGALGNYSGS PFLQSDILLD SPEQNDLVEE FFVDNVPGPD SQSDEEKKP
001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP
Arabidopsis Description
Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.