Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0317g00020.t01 | Wine grape | nucleus | 73.64 | 87.1 |
| VIT_14s0036g00440.t01 | Wine grape | nucleus | 70.0 | 77.78 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 38.18 | 72.41 |
| KRH01576 | Soybean | cytosol | 63.64 | 70.71 |
| Bra007149.1-P | Field mustard | nucleus | 60.91 | 70.53 |
| Bra014767.1-P | Field mustard | nucleus | 60.91 | 70.53 |
| CDY53585 | Canola | cytosol | 33.64 | 69.81 |
| KRG92960 | Soybean | nucleus | 61.82 | 69.39 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 56.36 | 65.96 |
| CDY20432 | Canola | cytosol | 47.27 | 65.82 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.82 | 64.77 |
| KRH70528 | Soybean | nucleus | 66.36 | 64.6 |
| Solyc05g054750.2.1 | Tomato | cytosol | 50.91 | 62.22 |
| PGSC0003DMT400060454 | Potato | cytosol | 57.27 | 60.58 |
| KRH36210 | Soybean | extracellular | 56.36 | 55.86 |
| VIT_01s0127g00340.t01 | Wine grape | cytosol | 31.82 | 35.35 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 28.18 | 14.42 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 36.36 | 12.31 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 35.45 | 10.6 |
| VIT_16s0050g02580.t01 | Wine grape | nucleus, plastid | 34.55 | 10.59 |
Protein Annotations
| ArrayExpress:VIT_00s0317g00030 | EMBL:FN596030 | EnsemblPlants:VIT_00s0317g00030.t01 | EnsemblPlantsGene:VIT_00s0317g00030 | EntrezGene:100244913 | EntrezGene:LOC100244913 |
| InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 | ProteinID:CBI33167 | ProteinID:CBI33167.3 |
| RefSeq:XP_002282451 | RefSeq:XP_002282451.1 | SEG:seg | TIGR:TC59919 | TIGRFAMs:TIGR01589 | UniParc:UPI00015CB06A |
| UniProt:D7TRP1 | wikigene:100244913 | wikigene:LOC100244913 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrUn:+:23002964..23004061
Molecular Weight (calculated)
12543.4 Da
IEP (calculated)
4.386
GRAVY (calculated)
-0.909
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSASYIH MVQHLIENCL IFHMSKEECM EALSKHANIE PVITSTVWNE LEKENKEFFE GYNTQTQTKD DRLSEAETDE LIQKMISDST SKDHRSSSKD
101: PADSSKDPDT
101: PADSSKDPDT
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.