Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0036g00440.t01 | Wine grape | nucleus | 86.02 | 80.81 |
| VIT_00s0317g00030.t01 | Wine grape | nucleus | 87.1 | 73.64 |
| Bra007149.1-P | Field mustard | nucleus | 74.19 | 72.63 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 45.16 | 72.41 |
| KRG92960 | Soybean | nucleus | 75.27 | 71.43 |
| CDY53585 | Canola | cytosol | 39.78 | 69.81 |
| KRH01576 | Soybean | cytosol | 73.12 | 68.69 |
| Bra014767.1-P | Field mustard | nucleus | 69.89 | 68.42 |
| CDY20432 | Canola | cytosol | 55.91 | 65.82 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 65.59 | 64.89 |
| Solyc05g054750.2.1 | Tomato | cytosol | 62.37 | 64.44 |
| KRH70528 | Soybean | nucleus | 76.34 | 62.83 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 59.14 | 62.5 |
| PGSC0003DMT400060454 | Potato | cytosol | 69.89 | 62.5 |
| KRH36210 | Soybean | extracellular | 66.67 | 55.86 |
| VIT_01s0127g00340.t01 | Wine grape | cytosol | 37.63 | 35.35 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 33.33 | 14.42 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 41.94 | 12.0 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 41.94 | 10.6 |
| VIT_16s0050g02580.t01 | Wine grape | nucleus, plastid | 37.63 | 9.75 |
Protein Annotations
| ArrayExpress:VIT_00s0317g00020 | EMBL:FN596030 | EnsemblPlants:VIT_00s0317g00020.t01 | EnsemblPlantsGene:VIT_00s0317g00020 | EntrezGene:100267224 | EntrezGene:LOC100267224 |
| InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 | ProteinID:CBI33166 | ProteinID:CBI33166.3 |
| RefSeq:XP_002282487 | RefSeq:XP_002282487.1 | SEG:seg | TIGR:TC52511 | TIGRFAMs:TIGR01589 | unigene:Vvi.2899 |
| UniParc:UPI00019847AD | UniProt:D7TRP0 | wikigene:100267224 | wikigene:LOC100267224 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrUn:+:22993827..22994431
Molecular Weight (calculated)
10860.7 Da
IEP (calculated)
4.487
GRAVY (calculated)
-0.740
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MGDSSASYIH MVQHLIEKCL IFHMSKEECM EALSKHADIN QVITSTVWNE LEKENKEFFE AYHTQTQTRD DRMSEAETNE MIQKMIADSK DSD
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.