Factsheet for VIT_15s0046g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06484	Soybean	nucleus	79.08	80.17
PGSC0003DMT400024865	Potato	nucleus	79.89	79.67
Solyc01g010520.2.1	Tomato	nucleus	76.63	78.77
KRH47919	Soybean	nucleus	76.63	78.55
VIT_16s0100g00590.t01	Wine grape	nucleus	45.11	77.21
KRG97168	Soybean	nucleus	72.83	74.86
Solyc05g007270.2.1	Tomato	cytosol	79.62	72.52
GSMUA_Achr7P14110_001	Banana	nucleus	69.84	71.19
VIT_16s0050g02580.t01	Wine grape	nucleus, plastid	67.39	69.08
GSMUA_Achr10P...	Banana	nucleus	67.12	68.42
TraesCS3D01G106200.1	Wheat	nucleus	64.95	66.76
KXG31543	Sorghum	nucleus	65.49	66.57
TraesCS3A01G104000.1	Wheat	unclear	64.95	66.57
Zm00001d039349_P002	Maize	nucleus	65.49	66.39
TraesCS3B01G122400.1	Wheat	nucleus	64.4	66.02
TraesCS3B01G171500.1	Wheat	nucleus	63.59	65.55
TraesCS3A01G144700.2	Wheat	nucleus	63.86	64.74
TraesCS3D01G153500.1	Wheat	cytosol	63.59	64.46
GSMUA_Achr6P05700_001	Banana	nucleus	60.6	63.53
GSMUA_Achr6P14310_001	Banana	nucleus	62.5	62.16
Zm00001d008954_P002	Maize	nucleus	64.67	60.25
Os05t0212400-01	Rice	cytosol, nucleus	57.34	59.44
Os01t0220200-01	Rice	cytosol, nucleus, plastid	18.21	55.37
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	40.76	52.26
VIT_00s0317g00020.t01	Wine grape	nucleus	10.6	41.94
VIT_08s0040g02650.t01	Wine grape	nucleus	10.05	39.36
VIT_08s0007g05400.t01	Wine grape	mitochondrion, nucleus	32.34	36.62
VIT_14s0036g00440.t01	Wine grape	nucleus	9.78	36.36
VIT_00s0317g00030.t01	Wine grape	nucleus	10.6	35.45
VIT_00s0317g00010.t01	Wine grape	cytosol	5.16	32.76
VIT_01s0127g00340.t01	Wine grape	cytosol	8.7	32.32

Protein Annotations

ArrayExpress:VIT_15s0046g00990	EMBL:FN596755	EnsemblPlants:VIT_15s0046g00990.t01	EnsemblPlantsGene:VIT_15s0046g00990	EntrezGene:100265382	EntrezGene:LOC100265382
InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713	ProteinID:CBI40507	ProteinID:CBI40507.3
RefSeq:XP_002281449	RefSeq:XP_002281449.2	RefSeq:XP_010661920.1	SEG:seg	TIGRFAMs:TIGR01589	unigene:Vvi.3968
UniParc:UPI00015CA2BF	UniProt:D7UCP2	wikigene:100265382	wikigene:LOC100265382	MapMan:35.2	:

Description

No Description!

Coordinates

chr15:-:18046425..18054747

Molecular Weight (calculated)

39655.6 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.292

Length

368 amino acids

Sequence
(BLAST)

001: MKTLQSAQEI QSSTQVSHES QSDHQNNTAE APVADSGSIC ISSNDSRKVS REDIELVQNL IERCLQLYMN RDEVVKTLLS RARIDPGFTT LVWQKLEEEN
101: ADFFRAYYIR LKLKKQIILF NHLLEHQAHL TNYHVSPKVP LAPIQNGIHP MPVNNLPMGY PVLQQPPIPA PGQPHIDSMG CGISSCHVVN GVPAPGNFHP
201: MRMNSGNDMV RDTSTADVAP VIPPSSAMSS MSEMPVSPTS VASSGHFPFT ASDISGMGVE ASALETAFTS DVASSVGLQL PPDGGPGNSR DSLRALAPIP
301: WNFSLSDLTA DLSNLGDLGA LGNYPGSPFL GSDSDILLDS PEQEDIVEEF FVDSVPGPPN AQSDEEKS

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.