Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14110_001 | Banana | nucleus | 87.53 | 87.53 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 67.87 | 69.8 |
| KXG31543 | Sorghum | nucleus | 69.53 | 69.34 |
| Zm00001d039349_P002 | Maize | nucleus | 68.7 | 68.32 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 67.31 | 67.88 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 67.04 | 67.79 |
| PGSC0003DMT400024865 | Potato | nucleus | 69.25 | 67.75 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 67.04 | 67.41 |
| TraesCS3A01G104000.1 | Wheat | unclear | 67.04 | 67.41 |
| Solyc01g010520.2.1 | Tomato | nucleus | 66.76 | 67.32 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 68.42 | 67.12 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 67.31 | 66.94 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 66.76 | 66.39 |
| KRH06484 | Soybean | nucleus | 65.93 | 65.56 |
| KRH47919 | Soybean | nucleus | 64.82 | 65.18 |
| CDX80017 | Canola | nucleus | 64.54 | 64.9 |
| Bra004538.1-P | Field mustard | nucleus | 64.54 | 64.9 |
| CDY42046 | Canola | nucleus | 65.93 | 64.67 |
| Zm00001d008954_P002 | Maize | nucleus | 70.08 | 64.05 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 65.37 | 63.78 |
| AT2G46420.3 | Thale cress | nucleus | 63.71 | 63.36 |
| AT3G61700.2 | Thale cress | nucleus | 62.6 | 62.09 |
| Solyc05g007270.2.1 | Tomato | cytosol | 68.42 | 61.14 |
| KRG97168 | Soybean | nucleus | 59.56 | 60.06 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 35.73 | 60.0 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 59.0 | 60.0 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 19.11 | 57.02 |
| CDY25057 | Canola | nucleus | 55.68 | 55.37 |
| Bra003465.1-P | Field mustard | nucleus | 55.96 | 55.19 |
| CDX67857 | Canola | nucleus | 55.68 | 54.92 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 41.27 | 51.92 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 10.53 | 48.1 |
| CDX71711 | Canola | mitochondrion | 56.51 | 45.43 |
| GSMUA_Achr10P... | Banana | cytosol | 10.25 | 39.78 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 8.31 | 38.46 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 33.52 | 37.81 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 9.97 | 37.5 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 9.97 | 37.11 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 9.7 | 36.08 |
| GSMUA_Achr10P... | Banana | nucleus | 31.58 | 35.51 |
| GSMUA_Achr11P... | Banana | nucleus | 31.58 | 35.08 |
| CDY11376 | Canola | cytosol | 56.79 | 12.46 |
| Bra007627.1-P | Field mustard | cytosol | 56.79 | 12.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21830_001 | EnsemblPlants:GSMUA_Achr10T21830_001 | EnsemblPlantsGene:GSMUA_Achr10G21830_001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 |
| PFAM:PF09713 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0002950786 | UniProt:M0RKA8 | MapMan:35.2 |
Description
plant-specific domain TIGR01589 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G21830_001]
Coordinates
chr10:-:27242047..27246866
Molecular Weight (calculated)
39042.9 Da
IEP (calculated)
4.573
GRAVY (calculated)
-0.304
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSQDPQCT TEVQPSSEAS HVLQGDHQNS PVVETPKVDS GSVSIASSNT RKVSRDDIEL VQNLIERCLQ LYMNRGEVVQ TLSNRARIEP GFTTLVWQKL
101: EEENSEFFRA YYIRLKLKKQ IILFNHLLEH QYHLMKYPIQ PKVPLPPIQN GIHPVPVSLP MGYPILPQHL MPATGQPHVD PMGCGLSSCH VVNGIPAPGS
201: FHPIRMNSGT NGTTEAAHTA PPAISSMSEM AVSPASAASS NHFPFSSEIS GIGLDVTALD TTFPPDVVNS GGLQLGSDGV GTSRDSIRSS GQLWNFSLSD
301: LTADLTNLGD LGVLGDYDGS PFLPSDSDIL LDSPEPDDIV EEYFADVATG SCPHQSDEEK S
101: EEENSEFFRA YYIRLKLKKQ IILFNHLLEH QYHLMKYPIQ PKVPLPPIQN GIHPVPVSLP MGYPILPQHL MPATGQPHVD PMGCGLSSCH VVNGIPAPGS
201: FHPIRMNSGT NGTTEAAHTA PPAISSMSEM AVSPASAASS NHFPFSSEIS GIGLDVTALD TTFPPDVVNS GGLQLGSDGV GTSRDSIRSS GQLWNFSLSD
301: LTADLTNLGD LGVLGDYDGS PFLPSDSDIL LDSPEPDDIV EEYFADVATG SCPHQSDEEK S
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.