Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80017 | Canola | nucleus | 84.07 | 85.24 |
| AT2G46420.3 | Thale cress | nucleus | 81.59 | 81.82 |
| PGSC0003DMT400024865 | Potato | nucleus | 73.63 | 72.63 |
| KRH06484 | Soybean | nucleus | 71.98 | 72.18 |
| KRH47919 | Soybean | nucleus | 71.15 | 72.14 |
| Solyc01g010520.2.1 | Tomato | nucleus | 70.6 | 71.79 |
| KRG97168 | Soybean | nucleus | 67.58 | 68.72 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 38.74 | 65.58 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 64.29 | 64.82 |
| Solyc05g007270.2.1 | Tomato | cytosol | 71.43 | 64.36 |
| Zm00001d039349_P002 | Maize | nucleus | 64.01 | 64.19 |
| KXG31543 | Sorghum | nucleus | 63.74 | 64.09 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 62.64 | 63.87 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 61.81 | 62.85 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 62.64 | 62.81 |
| GSMUA_Achr10P... | Banana | nucleus | 62.09 | 62.6 |
| TraesCS3A01G104000.1 | Wheat | unclear | 61.26 | 62.12 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 61.26 | 62.12 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 61.81 | 61.98 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 57.42 | 59.54 |
| Zm00001d008954_P002 | Maize | nucleus | 62.91 | 57.97 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 56.87 | 55.95 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 53.3 | 54.65 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 17.86 | 53.72 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 38.19 | 48.43 |
| AT3G55240.1 | Thale cress | nucleus | 10.71 | 41.05 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 9.34 | 38.64 |
| AT5G02580.1 | Thale cress | cytosol | 8.79 | 35.16 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 31.04 | 34.88 |
| AT5G04090.6 | Thale cress | nucleus | 30.77 | 34.78 |
| AT1G10657.1 | Thale cress | cytosol | 8.79 | 25.6 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825343 | UniProt:A8MQR1 | ProteinID:AEE80243.1 | ArrayExpress:AT3G61700 | EnsemblPlantsGene:AT3G61700 |
| RefSeq:AT3G61700 | TAIR:AT3G61700 | RefSeq:AT3G61700-TAIR-G | EnsemblPlants:AT3G61700.2 | TAIR:AT3G61700.2 | Unigene:At.34244 |
| InterPro:CHP01589_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0016787 | RefSeq:NP_001078325.1 |
| PFAM:PF09713 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31871 |
| PANTHER:PTHR31871:SF9 | TIGRFAMs:TIGR01589 | UniParc:UPI000150554F | SEG:seg | : | : |
Description
Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
Coordinates
chr3:+:22835127..22839188
Molecular Weight (calculated)
39816.8 Da
IEP (calculated)
4.534
GRAVY (calculated)
-0.398
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.