Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g010520.2.1 | Tomato | nucleus | 75.5 | 85.2 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 72.52 | 79.62 |
| Bra004538.1-P | Field mustard | nucleus | 67.57 | 76.04 |
| CDX80017 | Canola | nucleus | 67.33 | 75.77 |
| CDY42046 | Canola | nucleus | 68.56 | 75.27 |
| KRH06484 | Soybean | nucleus | 66.83 | 74.38 |
| KRH47919 | Soybean | nucleus | 65.59 | 73.82 |
| AT2G46420.3 | Thale cress | nucleus | 65.35 | 72.73 |
| AT3G61700.2 | Thale cress | nucleus | 64.36 | 71.43 |
| KRG97168 | Soybean | nucleus | 62.87 | 70.95 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 60.64 | 68.63 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 61.14 | 68.42 |
| GSMUA_Achr10P... | Banana | nucleus | 61.14 | 68.42 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 60.89 | 67.77 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 60.64 | 67.49 |
| KXG31543 | Sorghum | nucleus | 60.15 | 67.13 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 59.41 | 67.04 |
| Zm00001d039349_P002 | Maize | nucleus | 60.15 | 66.94 |
| TraesCS3A01G104000.1 | Wheat | unclear | 58.91 | 66.3 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 58.66 | 66.02 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 53.96 | 62.11 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 55.94 | 61.08 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 52.97 | 60.28 |
| Zm00001d008954_P002 | Maize | nucleus | 58.91 | 60.25 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 16.34 | 54.55 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 36.39 | 51.22 |
| Solyc05g054750.2.1 | Tomato | cytosol | 8.42 | 37.78 |
| Solyc10g084600.1.1 | Tomato | nucleus | 9.41 | 34.86 |
| Solyc10g079590.1.1 | Tomato | nucleus | 26.49 | 33.65 |
| Solyc09g005730.2.1 | Tomato | nucleus | 8.42 | 33.01 |
| Solyc05g005230.2.1 | Tomato | cytosol | 8.42 | 33.01 |
| Solyc01g005640.2.1 | Tomato | nucleus | 23.76 | 31.89 |
| Solyc10g079710.1.1 | Tomato | nucleus | 22.28 | 31.69 |
Protein Annotations
| EnsemblPlants:Solyc05g007270.2.1 | EnsemblPlantsGene:Solyc05g007270.2 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | PFAM:PF09713 |
| TIGRFAMs:TIGR01589 | UniParc:UPI0002765AA1 | UniProt:K4BWQ3 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5:-:1930337..1935562
Molecular Weight (calculated)
44380.5 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.347
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTTKPIKAE KKLQPNNTEK KPSIQASHEA QNDQQNHIAD TPVADAGSVS ASGNDNRKVS REDIELVQNL IERCLQLYMN KDEVVKTLLN RARIDPGFTT
101: LVWQKLEEEN ADFFRAYYIR LKLKKQIVLF NHLLEHQYHL MKYPVPPKVP LAPMQNGIST MPVNNLPMGY PVLQQPPVPA AGQPHLDPMG MSNCHVVNGV
201: PAPGNYHPMR MNSGNEWLWY LFQLFAQHLT CHVLKELPFD YFQMVIDTSV ADVAAAVPPG NAMSSMSDMA VSPTSVASSG HFPFTASEIS GMGVDTSALD
301: AAFPSDVASS VGLQLPPDNG VGNSRDSLRS LAQIPWNFSL SDLTADLSNL GDLGPLVNYP GSAYLPSDSD ILLDSPEQDD IEEFFVDVEA SPEPTGPQSD
401: EEKP
101: LVWQKLEEEN ADFFRAYYIR LKLKKQIVLF NHLLEHQYHL MKYPVPPKVP LAPMQNGIST MPVNNLPMGY PVLQQPPVPA AGQPHLDPMG MSNCHVVNGV
201: PAPGNYHPMR MNSGNEWLWY LFQLFAQHLT CHVLKELPFD YFQMVIDTSV ADVAAAVPPG NAMSSMSDMA VSPTSVASSG HFPFTASEIS GMGVDTSALD
301: AAFPSDVASS VGLQLPPDNG VGNSRDSLRS LAQIPWNFSL SDLTADLSNL GDLGPLVNYP GSAYLPSDSD ILLDSPEQDD IEEFFVDVEA SPEPTGPQSD
401: EEKP
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.