Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004538.1-P | Field mustard | nucleus | 97.55 | 100.0 |
| CDX80017 | Canola | nucleus | 97.28 | 99.72 |
| AT2G46420.3 | Thale cress | nucleus | 90.22 | 91.46 |
| PGSC0003DMT400024865 | Potato | nucleus | 77.45 | 77.24 |
| KRH06484 | Soybean | nucleus | 75.54 | 76.58 |
| Solyc01g010520.2.1 | Tomato | nucleus | 74.46 | 76.54 |
| KRH47919 | Soybean | nucleus | 74.46 | 76.32 |
| CDY25057 | Canola | nucleus | 73.37 | 74.38 |
| CDX67857 | Canola | nucleus | 73.64 | 74.04 |
| KRG97168 | Soybean | nucleus | 68.75 | 70.67 |
| Solyc05g007270.2.1 | Tomato | cytosol | 75.27 | 68.56 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 64.95 | 66.76 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 38.86 | 66.51 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 65.22 | 66.48 |
| TraesCS3A01G104000.1 | Wheat | unclear | 64.67 | 66.3 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 64.13 | 66.11 |
| GSMUA_Achr10P... | Banana | nucleus | 64.67 | 65.93 |
| Zm00001d039349_P002 | Maize | nucleus | 64.95 | 65.84 |
| KXG31543 | Sorghum | nucleus | 64.67 | 65.75 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 64.13 | 65.74 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 64.4 | 65.29 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 63.86 | 64.74 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 60.33 | 63.25 |
| CDX71711 | Canola | mitochondrion | 74.18 | 60.8 |
| Zm00001d008954_P002 | Maize | nucleus | 63.59 | 59.24 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 56.52 | 58.59 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 58.7 | 58.38 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 17.93 | 54.55 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 38.59 | 49.48 |
| CDY53585 | Canola | cytosol | 5.98 | 41.51 |
| CDY02930 | Canola | nucleus | 10.33 | 40.0 |
| CDY20432 | Canola | cytosol | 8.42 | 39.24 |
| CDY40206 | Canola | nucleus | 10.05 | 38.95 |
| CDX73396 | Canola | nucleus | 10.05 | 38.95 |
| CDX76114 | Canola | nucleus | 10.05 | 38.95 |
| CDY56714 | Canola | mitochondrion, nucleus | 32.34 | 36.28 |
| CDY11219 | Canola | cytosol | 8.97 | 36.26 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 8.97 | 36.26 |
| CDY41330 | Canola | mitochondrion, nucleus | 31.79 | 35.78 |
| CDY08617 | Canola | mitochondrion, nucleus | 30.71 | 34.35 |
| CDY00915 | Canola | mitochondrion, nucleus | 30.16 | 33.43 |
| CDY37956 | Canola | cytosol | 8.7 | 31.68 |
| CDX93395 | Canola | cytosol | 8.7 | 31.68 |
| CDY72004 | Canola | extracellular | 4.89 | 31.58 |
| CDY11376 | Canola | cytosol | 76.63 | 17.14 |
Protein Annotations
| EnsemblPlants:CDY42046 | EnsemblPlantsGene:GSBRNA2T00074063001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | PFAM:PF09713 |
| ProteinID:CDY42046 | ProteinID:CDY42046.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0004EB2D24 | UniProt:A0A078HWF8 | MapMan:35.2 |
Description
BnaC04g01240DBnaC04g01240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWF8]
Coordinates
chrLK032512:+:264798..268304
Molecular Weight (calculated)
40159.4 Da
IEP (calculated)
4.518
GRAVY (calculated)
-0.441
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGQSTQEM QSSTQVSHES QGEQKNNQSL EAPIQDSGSV SASSNDGRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIV FNHLLEHQYH LMKYPVHPKV PLVPMQNGIH PMAPVNNMPM GYPVLQHPQM HVPGHPHIDA MGMSSCHVVN GVPAPGNFQP
201: MRMNSGNDMV IDTTAADPTP PMIPPNNGMS SVSEMPVSPA SVASSGHFPF AASDMSGMGM DTSALDSAFT SDVGTSVGLQ LGPDGGAGNS RDNLRPFDQI
301: PWNFSLSDLT ADLSNLGDLG ALGNYPGSPF LPSDSEILLD SPEQEDIEEF FVDSIPGPSC PQSDEDKP
101: NADFFRAYYI RLKLKKQIIV FNHLLEHQYH LMKYPVHPKV PLVPMQNGIH PMAPVNNMPM GYPVLQHPQM HVPGHPHIDA MGMSSCHVVN GVPAPGNFQP
201: MRMNSGNDMV IDTTAADPTP PMIPPNNGMS SVSEMPVSPA SVASSGHFPF AASDMSGMGM DTSALDSAFT SDVGTSVGLQ LGPDGGAGNS RDNLRPFDQI
301: PWNFSLSDLT ADLSNLGDLG ALGNYPGSPF LPSDSEILLD SPEQEDIEEF FVDSIPGPSC PQSDEDKP
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.