Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76114 | Canola | nucleus | 97.89 | 97.89 |
| AT3G55240.1 | Thale cress | nucleus | 94.74 | 94.74 |
| CDX73396 | Canola | nucleus | 92.63 | 92.63 |
| CDY40206 | Canola | nucleus | 92.63 | 92.63 |
| CDY53585 | Canola | cytosol | 38.95 | 69.81 |
| CDY20432 | Canola | cytosol | 57.89 | 69.62 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 55.79 | 58.24 |
| CDY11219 | Canola | cytosol | 55.79 | 58.24 |
| CDY72004 | Canola | extracellular | 33.68 | 56.14 |
| CDX93395 | Canola | cytosol | 34.74 | 32.67 |
| CDY37956 | Canola | cytosol | 34.74 | 32.67 |
| CDY41330 | Canola | mitochondrion, nucleus | 40.0 | 11.62 |
| CDY56714 | Canola | mitochondrion, nucleus | 40.0 | 11.59 |
| CDY08617 | Canola | mitochondrion, nucleus | 40.0 | 11.55 |
| CDY00915 | Canola | mitochondrion, nucleus | 40.0 | 11.45 |
| CDY25057 | Canola | nucleus | 41.05 | 10.74 |
| CDX67857 | Canola | nucleus | 40.0 | 10.38 |
| CDY42046 | Canola | nucleus | 40.0 | 10.33 |
| CDX80017 | Canola | nucleus | 38.95 | 10.31 |
| CDX71711 | Canola | mitochondrion | 35.79 | 7.57 |
| CDY11376 | Canola | cytosol | 35.79 | 2.07 |
Protein Annotations
| EnsemblPlants:CDY02930 | EnsemblPlantsGene:GSBRNA2T00115196001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 |
| ProteinID:CDY02930 | ProteinID:CDY02930.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0004EDE876 | MapMan:35.2 |
Description
BnaC04g25560D
Coordinates
chrLK031938:+:583645..584528
Molecular Weight (calculated)
11018.9 Da
IEP (calculated)
4.517
GRAVY (calculated)
-0.702
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MADSSSASYI HMVHHMIEKC LIFNMSKEEC VEALSTHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETTQ LIQKIISDSS KESDD
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.