CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003465.1-P	Field mustard	nucleus	98.91	98.91
CDY25057	Canola	nucleus	95.36	96.14
CDX80017	Canola	nucleus	72.68	74.09
CDY42046	Canola	nucleus	74.04	73.64
CDX71711	Canola	mitochondrion	72.95	59.47
TraesCS3B01G171500.1	Wheat	nucleus	57.92	59.38
KXG31543	Sorghum	nucleus	58.2	58.84
Zm00001d039349_P002	Maize	nucleus	58.2	58.68
TraesCS3A01G144700.2	Wheat	nucleus	57.92	58.4
TraesCS3D01G106200.1	Wheat	nucleus	56.83	58.1
GSMUA_Achr7P14110_001	Banana	nucleus	57.1	57.89
TraesCS3D01G153500.1	Wheat	cytosol	57.38	57.85
TraesCS3A01G104000.1	Wheat	unclear	56.28	57.38
TraesCS3B01G122400.1	Wheat	nucleus	56.01	57.1
GSMUA_Achr10P...	Banana	nucleus	54.92	55.68
GSMUA_Achr6P05700_001	Banana	nucleus	52.19	54.42
Zm00001d008954_P002	Maize	nucleus	57.65	53.42
Os01t0220200-01	Rice	cytosol, nucleus, plastid	17.49	52.89
Os05t0212400-01	Rice	cytosol, nucleus	50.55	52.11
GSMUA_Achr6P14310_001	Banana	nucleus	51.09	50.54
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	34.15	43.55
CDY53585	Canola	cytosol	6.01	41.51
CDY02930	Canola	nucleus	10.38	40.0
CDX76114	Canola	nucleus	10.11	38.95
CDX73396	Canola	nucleus	10.11	38.95
CDY40206	Canola	nucleus	10.11	38.95
CDY20432	Canola	cytosol	8.2	37.97
CDX80829	Canola	cytosol, nucleus, peroxisome	9.29	37.36
CDY11219	Canola	cytosol	9.29	37.36
CDY56714	Canola	mitochondrion, nucleus	30.33	33.84
CDY41330	Canola	mitochondrion, nucleus	30.05	33.64
CDY08617	Canola	mitochondrion, nucleus	28.69	31.91
CDY72004	Canola	extracellular	4.92	31.58
CDY00915	Canola	mitochondrion, nucleus	28.42	31.33
CDX93395	Canola	cytosol	8.2	29.7
CDY37956	Canola	cytosol	8.2	29.7
CDY11376	Canola	cytosol	73.5	16.35

Protein Annotations

EnsemblPlants:CDX67857	EnsemblPlantsGene:GSBRNA2T00099057001	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
ProteinID:CDX67857	ProteinID:CDX67857.1	SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI0004EE0C1F	MapMan:35.2

Description

BnaA07g18970D

Coordinates

chrLK031787:+:2633342..2636791

Molecular Weight (calculated)

39841.9 Da

IEP (calculated)

4.257

GRAVY (calculated)

-0.344

Length

366 amino acids

Sequence
(BLAST)

001: MKSEQCAQKL QSSAQTSQES QSEQKVNQSL DASPIQDAVS VSAPSNDSRK VSRQDIELVQ NLIERCLQLY MNKDEVVKTL LTRARIEPAF TSLVWQKLEE
101: GNADFFRAYY IRLKLKKQIV IFNQLLEHQY HLMKYPPVPP KIPLAPMPNG MHHPMPPVVG MQIGYPVLPH PQMHVQGHPH IAAATAMSSC HVVNGVPAPP
201: HLQPLRMNST NDMVVDDTTV EDETPPQVVP PSSGEMAVSP ASVASSGHFP FVDSDMVMDT SVLDSEFTAD VGADGEGGGG GAGNSRDVSF DQIPWDFSLS
301: DLTADLSNLG DVYVGDLEAL GDYTGSPFLP SDSEILLDSP DQEGIEEFFA DSMPGPPCSS LDEEKP

Best Arabidopsis Sequence Match ( AT3G61700.2 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.