Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14110_001 | Banana | nucleus | 70.94 | 68.98 |
| GSMUA_Achr10P... | Banana | nucleus | 69.8 | 67.87 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 66.38 | 65.08 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 66.1 | 64.99 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 66.38 | 64.9 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 66.38 | 64.19 |
| KXG31543 | Sorghum | nucleus | 66.1 | 64.09 |
| TraesCS3A01G104000.1 | Wheat | unclear | 65.53 | 64.07 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 65.81 | 63.64 |
| Zm00001d039349_P002 | Maize | nucleus | 64.96 | 62.81 |
| KRH47919 | Soybean | nucleus | 64.1 | 62.67 |
| KRH06484 | Soybean | nucleus | 63.82 | 61.71 |
| CDX80017 | Canola | nucleus | 62.96 | 61.56 |
| Bra004538.1-P | Field mustard | nucleus | 62.68 | 61.28 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 63.53 | 60.6 |
| AT2G46420.3 | Thale cress | nucleus | 62.39 | 60.33 |
| CDY42046 | Canola | nucleus | 63.25 | 60.33 |
| PGSC0003DMT400024865 | Potato | nucleus | 62.96 | 59.89 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 62.68 | 59.46 |
| Zm00001d008954_P002 | Maize | nucleus | 65.53 | 58.23 |
| Solyc01g010520.2.1 | Tomato | nucleus | 59.26 | 58.1 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 58.69 | 58.03 |
| AT3G61700.2 | Thale cress | nucleus | 59.54 | 57.42 |
| KRG97168 | Soybean | nucleus | 58.4 | 57.26 |
| Solyc05g007270.2.1 | Tomato | cytosol | 62.11 | 53.96 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 43.59 | 53.31 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 32.48 | 53.02 |
| Bra003465.1-P | Field mustard | nucleus | 54.7 | 52.46 |
| CDY25057 | Canola | nucleus | 54.13 | 52.34 |
| CDX67857 | Canola | nucleus | 54.42 | 52.19 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 16.52 | 47.93 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 9.97 | 44.3 |
| CDX71711 | Canola | mitochondrion | 55.56 | 43.43 |
| GSMUA_Achr10P... | Banana | cytosol | 10.26 | 38.71 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 8.55 | 38.46 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 10.26 | 37.5 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 10.26 | 37.11 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 33.05 | 36.25 |
| GSMUA_Achr10P... | Banana | nucleus | 32.48 | 35.51 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 9.69 | 35.05 |
| GSMUA_Achr11P... | Banana | nucleus | 32.19 | 34.77 |
| CDY11376 | Canola | cytosol | 55.56 | 11.85 |
| Bra007627.1-P | Field mustard | cytosol | 55.27 | 11.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P05700_001 | EnsemblPlants:GSMUA_Achr6T05700_001 | EnsemblPlantsGene:GSMUA_Achr6G05700_001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 |
| PFAM:PF09713 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI000296A93A | UniProt:M0T4G8 | MapMan:35.2 |
Description
plant-specific domain TIGR01589 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G05700_001]
Coordinates
chr6:-:3839725..3845445
Molecular Weight (calculated)
38497.3 Da
IEP (calculated)
4.493
GRAVY (calculated)
-0.327
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAEMQPSSQ DSHDIRNNHQ NTLVTEASGQ DPSSSTFADS KSKKVSHADI ELVQNLIERC LQLYMNKGEV VRTLSNRARI EPGFTALVWQ KLEEENPEFF
101: RAYYIRLKLK KQIILFNQLL EHQYHLMKYP IPFKVPLVPM QNGIHPVHVN NLPMGYPVLQ PQILTTGQLH VDPMACGLSD YHVVNGIPAP GSSHPIRMNT
201: GNDDTSEAAP LAPQCSTMSP MSEMAVTSAS VESNQFSFTP SEITMGMDAS AIDTTFTPDV FNTGGLQLGA DGVTSSKDSI RSLGQLWNFS LSDLTADMTN
301: LGDFGALGGY SGSPFLPSDS DILLDSPDQD DLVEYFADSI TGKCSQSNED K
101: RAYYIRLKLK KQIILFNQLL EHQYHLMKYP IPFKVPLVPM QNGIHPVHVN NLPMGYPVLQ PQILTTGQLH VDPMACGLSD YHVVNGIPAP GSSHPIRMNT
201: GNDDTSEAAP LAPQCSTMSP MSEMAVTSAS VESNQFSFTP SEITMGMDAS AIDTTFTPDV FNTGGLQLGA DGVTSSKDSI RSLGQLWNFS LSDLTADMTN
301: LGDFGALGGY SGSPFLPSDS DILLDSPDQD DLVEYFADSI TGKCSQSNED K
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.