Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004538.1-P | Field mustard | nucleus | 90.08 | 91.09 |
| CDY42046 | Canola | nucleus | 91.46 | 90.22 |
| AT3G61700.2 | Thale cress | nucleus | 81.82 | 81.59 |
| KRH47919 | Soybean | nucleus | 73.0 | 73.82 |
| PGSC0003DMT400024865 | Potato | nucleus | 74.93 | 73.71 |
| KRH06484 | Soybean | nucleus | 73.55 | 73.55 |
| Solyc01g010520.2.1 | Tomato | nucleus | 71.63 | 72.63 |
| KRG97168 | Soybean | nucleus | 68.59 | 69.55 |
| Solyc05g007270.2.1 | Tomato | cytosol | 72.73 | 65.35 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 64.46 | 64.82 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 63.09 | 64.15 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 63.09 | 63.97 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 37.74 | 63.72 |
| GSMUA_Achr10P... | Banana | nucleus | 63.36 | 63.71 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 63.36 | 63.36 |
| KXG31543 | Sorghum | nucleus | 63.09 | 63.26 |
| TraesCS3A01G104000.1 | Wheat | unclear | 62.53 | 63.23 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 62.81 | 62.81 |
| Zm00001d039349_P002 | Maize | nucleus | 62.81 | 62.81 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 61.98 | 62.67 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 60.33 | 62.39 |
| Zm00001d008954_P002 | Maize | nucleus | 61.98 | 56.96 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 57.02 | 55.95 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 54.55 | 55.77 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 17.36 | 52.07 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 37.74 | 47.74 |
| AT3G55240.1 | Thale cress | nucleus | 10.74 | 41.05 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 9.09 | 37.5 |
| AT5G02580.1 | Thale cress | cytosol | 8.82 | 35.16 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 30.85 | 34.57 |
| AT5G04090.6 | Thale cress | nucleus | 30.3 | 34.16 |
| AT1G10657.1 | Thale cress | cytosol | 8.54 | 24.8 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819250 | UniProt:A0A178VVR0 | ProteinID:AAD23044.2 | ProteinID:AEC10692.1 | ProteinID:ANM61421.1 |
| ArrayExpress:AT2G46420 | EnsemblPlantsGene:AT2G46420 | RefSeq:AT2G46420 | TAIR:AT2G46420 | RefSeq:AT2G46420-TAIR-G | EnsemblPlants:AT2G46420.3 |
| EMBL:AY052357 | Unigene:At.23265 | EMBL:BT002631 | InterPro:CHP01589_pln | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0016787 | RefSeq:NP_001323638.1 | RefSeq:NP_566074.1 | ProteinID:OAP09491.1 | PFAM:PF09713 |
| PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | UniProt:Q9SKD8 | TIGRFAMs:TIGR01589 | UniParc:UPI00000ABF82 | : |
Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
Coordinates
chr2:+:19053645..19057106
Molecular Weight (calculated)
39561.6 Da
IEP (calculated)
4.523
GRAVY (calculated)
-0.377
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.