Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93395 | Canola | cytosol | 72.0 | 89.11 |
| CDY37956 | Canola | cytosol | 72.0 | 89.11 |
| Bra019909.1-P | Field mustard | cytosol | 64.0 | 88.89 |
| VIT_01s0127g00340.t01 | Wine grape | cytosol | 47.2 | 59.6 |
| PGSC0003DMT400035154 | Potato | cytosol | 44.0 | 53.92 |
| Solyc05g005230.2.1 | Tomato | cytosol | 43.2 | 52.43 |
| KRG99379 | Soybean | cytosol | 42.4 | 51.96 |
| KRH45644 | Soybean | cytosol | 42.4 | 51.96 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 27.2 | 38.64 |
| AT3G55240.1 | Thale cress | nucleus | 28.8 | 37.89 |
| AT5G02580.1 | Thale cress | cytosol | 26.4 | 36.26 |
| AT3G61700.2 | Thale cress | nucleus | 25.6 | 8.79 |
| AT5G04090.6 | Thale cress | nucleus | 22.4 | 8.7 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 22.4 | 8.64 |
| AT2G46420.3 | Thale cress | nucleus | 24.8 | 8.54 |
Protein Annotations
| MapMan:35.2 | EntrezGene:5007676 | ProteinID:AEE28616.1 | EMBL:AK228507 | ArrayExpress:AT1G10657 | EnsemblPlantsGene:AT1G10657 |
| RefSeq:AT1G10657 | TAIR:AT1G10657 | RefSeq:AT1G10657-TAIR-G | EnsemblPlants:AT1G10657.1 | TAIR:AT1G10657.1 | InterPro:CHP01589_pln |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001077506.1 |
| PFAM:PF09713 | PO:PO:0000293 | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF5 | UniProt:Q0WR17 | TMHMM:TMhelix |
| UniParc:UPI0000DB52A3 | : | : | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
Coordinates
chr1:+:3530451..3532017
Molecular Weight (calculated)
14660.0 Da
IEP (calculated)
9.350
GRAVY (calculated)
-0.200
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVFSYILGFA SVLQKKLHDI FPPPAVWRGL QRENKDFFET
101: YGHFVSPRPF LSGYVRRSPR FAKRI
101: YGHFVSPRPF LSGYVRRSPR FAKRI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.