Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007149.1-P | Field mustard | nucleus | 97.89 | 97.89 |
| CDX73396 | Canola | nucleus | 97.89 | 97.89 |
| CDY40206 | Canola | nucleus | 97.89 | 97.89 |
| Bra014767.1-P | Field mustard | nucleus | 94.74 | 94.74 |
| CDX76114 | Canola | nucleus | 94.74 | 94.74 |
| CDY02930 | Canola | nucleus | 94.74 | 94.74 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 65.26 | 70.45 |
| AT5G02580.1 | Thale cress | cytosol | 54.74 | 57.14 |
| AT1G10657.1 | Thale cress | cytosol | 37.89 | 28.8 |
| AT5G04090.6 | Thale cress | nucleus | 42.11 | 12.42 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 40.0 | 11.73 |
| AT2G46420.3 | Thale cress | nucleus | 41.05 | 10.74 |
| AT3G61700.2 | Thale cress | nucleus | 41.05 | 10.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824690 | ProteinID:AEE79356.1 | ArrayExpress:AT3G55240 | EnsemblPlantsGene:AT3G55240 | RefSeq:AT3G55240 |
| TAIR:AT3G55240 | RefSeq:AT3G55240-TAIR-G | EnsemblPlants:AT3G55240.1 | TAIR:AT3G55240.1 | EMBL:AY080704 | EMBL:BT000964 |
| ProteinID:CAB75758.1 | InterPro:CHP01589_pln | GO:GO:0008150 | GO:GO:0032502 | RefSeq:NP_191084.1 | PFAM:PF09713 |
| PO:PO:0000293 | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | UniProt:Q9M3C7 | TIGRFAMs:TIGR01589 | UniParc:UPI00000AC515 |
| SEG:seg | : | : | : | : | : |
Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
Coordinates
chr3:-:20473335..20475332
Molecular Weight (calculated)
11091.0 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.785
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.