Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 69.25 | 68.83 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 66.77 | 66.15 |
| CDY41330 | Canola | mitochondrion, nucleus | 67.08 | 66.06 |
| CDY56714 | Canola | mitochondrion, nucleus | 67.08 | 65.85 |
| CDY08617 | Canola | mitochondrion, nucleus | 66.77 | 65.35 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 66.77 | 65.35 |
| CDY00915 | Canola | mitochondrion, nucleus | 66.46 | 64.46 |
| KRH66806 | Soybean | nucleus | 55.9 | 53.73 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 53.11 | 52.62 |
| KRG95131 | Soybean | nucleus | 54.97 | 52.21 |
| PGSC0003DMT400076756 | Potato | nucleus | 47.52 | 49.04 |
| Solyc10g079710.1.1 | Tomato | nucleus | 41.93 | 47.54 |
| PGSC0003DMT400076729 | Potato | nucleus | 45.03 | 46.47 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 45.96 | 46.25 |
| Solyc10g079590.1.1 | Tomato | nucleus | 44.72 | 45.28 |
| KXG29427 | Sorghum | nucleus | 44.72 | 44.72 |
| Os02t0137100-01 | Rice | nucleus | 45.34 | 44.38 |
| GSMUA_Achr10P... | Banana | nucleus | 43.79 | 43.93 |
| Solyc01g005640.2.1 | Tomato | nucleus | 40.99 | 43.85 |
| GSMUA_Achr11P... | Banana | nucleus | 44.1 | 43.69 |
| PGSC0003DMT400081823 | Potato | nucleus | 42.86 | 43.4 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 40.99 | 43.28 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 40.37 | 42.62 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 40.37 | 42.62 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 42.55 | 42.28 |
| AT3G55240.1 | Thale cress | nucleus | 12.42 | 42.11 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 42.24 | 41.98 |
| EER90343 | Sorghum | nucleus | 34.16 | 38.19 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 40.06 | 38.17 |
| Zm00001d054004_P001 | Maize | nucleus | 40.37 | 38.12 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 10.25 | 37.5 |
| AT5G02580.1 | Thale cress | cytosol | 9.94 | 35.16 |
| HORVU6Hr1G018770.3 | Barley | plastid | 43.48 | 34.15 |
| AT3G61700.2 | Thale cress | nucleus | 34.78 | 30.77 |
| AT2G46420.3 | Thale cress | nucleus | 34.16 | 30.3 |
| AT1G10657.1 | Thale cress | cytosol | 8.7 | 22.4 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830288 | UniProt:A0A178UIE7 | UniProt:A0A1P8BE07 | ProteinID:AED90697.1 | ProteinID:ANM69828.1 |
| ProteinID:ANM69829.1 | ProteinID:ANM69831.1 | ArrayExpress:AT5G04090 | EnsemblPlantsGene:AT5G04090 | RefSeq:AT5G04090 | TAIR:AT5G04090 |
| RefSeq:AT5G04090-TAIR-G | EnsemblPlants:AT5G04090.6 | Unigene:At.50429 | EMBL:BT015375 | EMBL:BT015671 | InterPro:CHP01589_pln |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 | RefSeq:NP_001331478.1 | RefSeq:NP_001331479.1 | RefSeq:NP_001331481.1 |
| RefSeq:NP_974728.2 | ProteinID:OAO92934.1 | ProteinID:OAO92935.1 | PFAM:PF09713 | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| TIGRFAMs:TIGR01589 | UniParc:UPI0007DFB888 | : | : | : | : |
Description
Plant protein 1589 of unknown function [Source:TAIR;Acc:AT5G04090]
Coordinates
chr5:-:1105410..1108163
Molecular Weight (calculated)
36429.4 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.649
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSSDRNRI ASTDISPMSS LTVRRVSRED IQLVQNLIER CLQLYMNQKE VVDTLLEQAK IEPGFTELVW QKLEEENREF FKAYYLRLMV KHQIMEYNEL
101: LEQQINHMRQ MHPTAGASVR NRNGSHVPPM NQQQLLYERK EPDQSSPNLS SPYLNGGSAI NTNIPSYVDF SSHSRRVDPS PNSLSLQATN MPLMQGMIKS
201: ETAYQNCAPY MYGGEAQSTV GDVTIASFSN DSSNQSLNDP LVDPDAPTFG SLGQIPQNFS LSDLTADFSQ SSDILESYEG SPFLLADAEN FLDSSERVEH
301: QGDHERLRTI SSGFSYENFR SN
101: LEQQINHMRQ MHPTAGASVR NRNGSHVPPM NQQQLLYERK EPDQSSPNLS SPYLNGGSAI NTNIPSYVDF SSHSRRVDPS PNSLSLQATN MPLMQGMIKS
201: ETAYQNCAPY MYGGEAQSTV GDVTIASFSN DSSNQSLNDP LVDPDAPTFG SLGQIPQNFS LSDLTADFSQ SSDILESYEG SPFLLADAEN FLDSSERVEH
301: QGDHERLRTI SSGFSYENFR SN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.