Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G093800.1 | Wheat | nucleus | 99.38 | 99.38 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 95.06 | 91.12 |
| Os02t0137100-01 | Rice | nucleus | 81.17 | 79.94 |
| KXG29427 | Sorghum | nucleus | 78.09 | 78.57 |
| HORVU6Hr1G018770.3 | Barley | plastid | 96.91 | 76.59 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 61.42 | 65.25 |
| Zm00001d054004_P001 | Maize | nucleus | 61.73 | 58.65 |
| GSMUA_Achr11P... | Banana | nucleus | 57.72 | 57.54 |
| GSMUA_Achr10P... | Banana | nucleus | 56.17 | 56.7 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 55.56 | 56.25 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 48.46 | 48.31 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 47.84 | 47.84 |
| KRH66806 | Soybean | nucleus | 49.07 | 47.46 |
| PGSC0003DMT400076756 | Potato | nucleus | 45.37 | 47.12 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 47.84 | 47.11 |
| CDY08617 | Canola | mitochondrion, nucleus | 47.53 | 46.81 |
| KRG95131 | Soybean | nucleus | 48.77 | 46.61 |
| CDY00915 | Canola | mitochondrion, nucleus | 47.22 | 46.08 |
| CDY56714 | Canola | mitochondrion, nucleus | 46.6 | 46.04 |
| CDY41330 | Canola | mitochondrion, nucleus | 46.3 | 45.87 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 45.99 | 45.85 |
| PGSC0003DMT400076729 | Potato | nucleus | 41.05 | 42.63 |
| Solyc10g079710.1.1 | Tomato | nucleus | 37.35 | 42.61 |
| AT5G04090.6 | Thale cress | nucleus | 42.28 | 42.55 |
| Solyc10g079590.1.1 | Tomato | nucleus | 41.05 | 41.82 |
| PGSC0003DMT400081823 | Potato | nucleus | 41.05 | 41.82 |
| Solyc01g005640.2.1 | Tomato | nucleus | 38.27 | 41.2 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 10.49 | 35.79 |
| TraesCS3A01G104000.1 | Wheat | unclear | 34.88 | 31.48 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 34.88 | 31.13 |
| TraesCS1A01G287200.1 | Wheat | cytosol | 9.26 | 30.3 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 20.99 | 23.69 |
| TraesCS4A01G101700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 8.64 | 19.58 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G104900.1 | EnsemblPlantsGene:TraesCS6A01G104900 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 | PFAM:PF09713 |
| TIGRFAMs:TIGR01589 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:73637967..73641267
Molecular Weight (calculated)
35344.6 Da
IEP (calculated)
4.173
GRAVY (calculated)
-0.459
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGEEGERR KVSREDIQLV QNLIERCLQL YMNQKEVVET LSFQAKIEPS FTELVWQKLE EENPEFFKAY YVRLMLKNQI NVFNKLLAHQ CRLMNKDPSG
101: ALSITPTAPN GSDSSTLNQN TCFLQDTTST AIPDSFLHNG NSSGVINGAP ATDQFIYGGK VVHGLPSGMD ASVSLLSAHN STGGQFNGDN GTTIKAESSF
201: SSNPEFAFCN ENTYLEPCQS IGDASGGSFS SSELNGQPLG DTILDMDTSS YGFLSQIPRN FSFSDLTEDF SHSTEILENY GRSPFIPSET NNFSESTAGG
301: HTEIGNIRLD SISEGVSYED FGSD
101: ALSITPTAPN GSDSSTLNQN TCFLQDTTST AIPDSFLHNG NSSGVINGAP ATDQFIYGGK VVHGLPSGMD ASVSLLSAHN STGGQFNGDN GTTIKAESSF
201: SSNPEFAFCN ENTYLEPCQS IGDASGGSFS SSELNGQPLG DTILDMDTSS YGFLSQIPRN FSFSDLTEDF SHSTEILENY GRSPFIPSET NNFSESTAGG
301: HTEIGNIRLD SISEGVSYED FGSD
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.