Factsheet for TraesCS6B01G134100.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G104900.1	Wheat	nucleus	91.12	95.06
TraesCS6D01G093800.1	Wheat	nucleus	90.83	94.75
Os02t0137100-01	Rice	nucleus	74.56	76.6
KXG29427	Sorghum	nucleus	71.89	75.47
HORVU6Hr1G018770.3	Barley	plastid	88.46	72.93
TraesCS7B01G313700.1	Wheat	nucleus	59.17	65.57
Zm00001d054004_P001	Maize	nucleus	56.21	55.72
GSMUA_Achr11P...	Banana	nucleus	52.07	54.15
GSMUA_Achr10P...	Banana	nucleus	50.59	53.27
GSMUA_Achr1P08340_001	Banana	cytosol	50.0	52.81
VIT_08s0007g05400.t01	Wine grape	mitochondrion, nucleus	43.79	45.54
AT3G10250.5	Thale cress	mitochondrion, nucleus	43.49	45.37
KRH66806	Soybean	nucleus	44.38	44.78
Bra029826.1-P	Field mustard	mitochondrion, nucleus	43.49	44.68
CDY08617	Canola	mitochondrion, nucleus	43.2	44.38
PGSC0003DMT400076756	Potato	nucleus	40.83	44.23
KRG95131	Soybean	nucleus	44.08	43.95
CDY00915	Canola	mitochondrion, nucleus	42.9	43.67
CDY56714	Canola	mitochondrion, nucleus	42.31	43.6
CDY41330	Canola	mitochondrion, nucleus	42.01	43.43
Bra034101.1-P	Field mustard	mitochondrion, nucleus	41.72	43.38
Solyc10g079710.1.1	Tomato	nucleus	35.5	42.25
PGSC0003DMT400076729	Potato	nucleus	36.98	40.06
AT5G04090.6	Thale cress	nucleus	38.17	40.06
Solyc10g079590.1.1	Tomato	nucleus	36.98	39.31
PGSC0003DMT400081823	Potato	nucleus	36.98	39.31
Solyc01g005640.2.1	Tomato	nucleus	34.32	38.54
TraesCS3B01G388300.1	Wheat	cytosol, nucleus, plastid	9.47	33.33
TraesCS3B01G122400.1	Wheat	nucleus	31.95	30.08
TraesCS3B01G171500.1	Wheat	nucleus	31.36	29.69
TraesCS1B01G296600.1	Wheat	cytosol	8.28	28.57
TraesCS4B01G202900.2	Wheat	cytosol	6.21	21.65

Protein Annotations

EnsemblPlants:TraesCS6B01G134100.4	EnsemblPlantsGene:TraesCS6B01G134100	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF1	PFAM:PF09713
TIGRFAMs:TIGR01589	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:130965024..130967414

Molecular Weight (calculated)

36951.7 Da

IEP (calculated)

4.220

GRAVY (calculated)

-0.300

Length

338 amino acids

Sequence
(BLAST)

001: MTGISLHLDK ILCSFLHAYF LEAMSFHAET TLQVQNLIER CLQLYMNQKE VVETLSFQAK IEPSFTELVW QKLEEENPEF FKAYYVRLML KNQINVFNKL
101: LAHQCRLMNK DPSGALSITP TAPNGSDSST LNQNTCFLQD TTSTAIPDSF LHNGNSSGVI NGAPATDQFI YGGKVVHGLP SGMDASVSLL SAHNSTGAQF
201: NGDNGTTIKA ESSFSSNPEF AFCNENTYLE PCQSIGDASG GSFSSSELNG QPLGDTILDM DTSSYGFLSQ IPRNFSFSDL TEDFSHSTEI LENYGRSPFI
301: PSETNNFSES TAGGHTEIGN IRLDSISEGV SYEDFGSD

Best Arabidopsis Sequence Match ( AT3G10250.1 )
(BLAST)

001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE

Arabidopsis Description

AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.