Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G349400.1 | Wheat | cytosol, nucleus, plastid | 97.92 | 98.95 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 97.92 | 98.95 |
| HORVU3Hr1G087010.1 | Barley | cytosol, nucleus, plastid | 94.79 | 91.0 |
| Zm00001d012431_P001 | Maize | cytosol, nucleus, plastid | 68.75 | 64.08 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 64.58 | 60.78 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 48.96 | 59.49 |
| TraesCS1B01G296600.1 | Wheat | cytosol | 58.33 | 57.14 |
| KRH67570 | Soybean | cytosol | 54.17 | 55.91 |
| KRG95854 | Soybean | cytosol | 54.17 | 55.91 |
| GSMUA_Achr10P... | Banana | cytosol | 53.12 | 54.84 |
| CDY72004 | Canola | extracellular | 32.29 | 54.39 |
| Bra005731.1-P | Field mustard | cytosol | 51.04 | 53.85 |
| CDY11219 | Canola | cytosol | 51.04 | 53.85 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 51.04 | 53.85 |
| AT5G02580.1 | Thale cress | cytosol | 50.0 | 52.75 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 52.08 | 51.55 |
| VIT_08s0040g02650.t01 | Wine grape | nucleus | 50.0 | 51.06 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 50.0 | 50.0 |
| PGSC0003DMT400061428 | Potato | nucleus | 52.08 | 49.02 |
| VIT_00s0317g00010.t01 | Wine grape | cytosol | 29.17 | 48.28 |
| KRH19744 | Soybean | cytosol | 47.92 | 47.92 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 47.92 | 47.42 |
| Solyc09g005730.2.1 | Tomato | nucleus | 48.96 | 45.63 |
| Solyc10g084600.1.1 | Tomato | nucleus | 46.88 | 41.28 |
| EES01725 | Sorghum | cytosol, nucleus, plastid | 69.79 | 39.18 |
| Zm00001d042940_P001 | Maize | nucleus | 71.88 | 36.13 |
| TraesCS4B01G202900.2 | Wheat | cytosol | 36.46 | 36.08 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 40.62 | 10.92 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 40.62 | 10.86 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 31.25 | 9.84 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 33.33 | 9.47 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G388300.1 | EnsemblPlantsGene:TraesCS3B01G388300 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF8 | PFAM:PF09713 |
| SEG:seg | TIGRFAMs:TIGR01589 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:611150853..611151493
Molecular Weight (calculated)
10851.4 Da
IEP (calculated)
4.386
GRAVY (calculated)
-1.038
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MADDSSSPAS YIRLVQHLIE KCICYDMNKE ECVQALEKHA NIMPAVTSTV WKELEKENRE FFETYKKDRG GESPSQKGSP SDQASTSRSS DDNDDD
001: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVWRGLQREN KDFFETYGHF VSPRPFLSGY VRRSPRFAKR
101: I
101: I
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.