Factsheet for TraesCS3B01G171500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G144700.2	Wheat	nucleus	99.72	98.07
TraesCS3D01G153500.1	Wheat	cytosol	98.88	97.25
TraesCS3B01G122400.1	Wheat	nucleus	93.28	92.76
KXG31543	Sorghum	nucleus	88.52	87.29
Zm00001d039349_P002	Maize	nucleus	87.68	86.23
Zm00001d008954_P002	Maize	nucleus	87.11	78.73
Os01t0220200-01	Rice	cytosol, nucleus, plastid	25.21	74.38
GSMUA_Achr7P14110_001	Banana	nucleus	68.07	67.31
GSMUA_Achr10P...	Banana	nucleus	67.79	67.04
PGSC0003DMT400024865	Potato	nucleus	68.63	66.4
GSMUA_Achr6P05700_001	Banana	nucleus	64.99	66.1
Solyc01g010520.2.1	Tomato	nucleus	65.83	65.64
KRH47919	Soybean	nucleus	65.83	65.46
KRH06484	Soybean	nucleus	66.39	65.29
CDY42046	Canola	nucleus	66.11	64.13
Bra004538.1-P	Field mustard	nucleus	64.43	64.07
CDX80017	Canola	nucleus	64.15	63.79
VIT_15s0046g00990.t01	Wine grape	nucleus	65.55	63.59
AT2G46420.3	Thale cress	nucleus	64.15	63.09
AT3G61700.2	Thale cress	nucleus	63.87	62.64
KRG97168	Soybean	nucleus	61.9	61.73
GSMUA_Achr6P14310_001	Banana	nucleus	63.59	61.35
Solyc05g007270.2.1	Tomato	cytosol	68.63	60.64
CDX67857	Canola	nucleus	59.38	57.92
Bra003465.1-P	Field mustard	nucleus	59.38	57.92
CDY25057	Canola	nucleus	57.98	57.02
VIT_16s0100g00590.t01	Wine grape	nucleus	33.05	54.88
CDX71711	Canola	mitochondrion	58.82	46.77
TraesCS3B01G388300.1	Wheat	cytosol, nucleus, plastid	10.92	40.62
TraesCS1B01G296600.1	Wheat	cytosol	9.24	33.67
TraesCS7B01G313700.1	Wheat	nucleus	28.29	33.11
TraesCS6B01G134100.4	Wheat	extracellular	29.69	31.36
TraesCS4B01G202900.2	Wheat	cytosol	6.44	23.71
Bra007627.1-P	Field mustard	cytosol	59.94	13.01
CDY11376	Canola	cytosol	59.38	12.89

Protein Annotations

EnsemblPlants:TraesCS3B01G171500.1	EnsemblPlantsGene:TraesCS3B01G171500	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
SEG:seg	TIGRFAMs:TIGR01589	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3B:-:172316441..172319838

Molecular Weight (calculated)

38681.6 Da

IEP (calculated)

4.281

GRAVY (calculated)

-0.360

Length

357 amino acids

Sequence
(BLAST)

001: MKDSQDIQST TELQMSPQGT NEVQSNQLNT MATDAPAGDP GSVAVANNDN RKVSREDIEL VQNLIERCLQ LYMTKGEVVR TLSTRARIEP GFTTLVWQKL
101: EEENSEFFRA YYIRLKLKRQ IVLFNHLLQH QYNLMKYPAP PNVPLAPMQN GMHPMPVNNL PMGYPVLQQP LMPAPGQPHI DPMVCGLSSG HVVNGIPAPG
201: GYHPMRMNSV NDMVVDNGAP EAAHAGAMSS DMAVSPSSAA SSHAPFTPSE IPGMAMDTSV LDSAFGSEIG NTGPLQLGAD GSSRDSIRSL GQLWNFSLSD
301: LTADLTSLGD LEALENYAGT PFLPSDSDLL LDSPDHDDIV EYFADAINGS QSDEEKP

Best Arabidopsis Sequence Match ( AT3G61700.1 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.