Factsheet for Bra004538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42046	Canola	nucleus	100.0	97.55
AT2G46420.3	Thale cress	nucleus	91.09	90.08
PGSC0003DMT400024865	Potato	nucleus	77.99	75.88
KRH06484	Soybean	nucleus	75.77	74.93
KRH47919	Soybean	nucleus	74.93	74.93
Solyc01g010520.2.1	Tomato	nucleus	74.65	74.86
Bra003465.1-P	Field mustard	nucleus	74.37	72.95
KRG97168	Soybean	nucleus	68.25	68.44
Solyc05g007270.2.1	Tomato	cytosol	76.04	67.57
GSMUA_Achr7P14110_001	Banana	nucleus	65.46	65.1
TraesCS3D01G106200.1	Wheat	nucleus	64.9	65.08
VIT_16s0100g00590.t01	Wine grape	nucleus	38.72	64.65
TraesCS3A01G104000.1	Wheat	unclear	64.62	64.62
GSMUA_Achr10P...	Banana	nucleus	64.9	64.54
TraesCS3B01G171500.1	Wheat	nucleus	64.07	64.43
Zm00001d039349_P002	Maize	nucleus	64.9	64.19
KXG31543	Sorghum	nucleus	64.62	64.09
TraesCS3B01G122400.1	Wheat	nucleus	64.07	64.07
TraesCS3A01G144700.2	Wheat	nucleus	64.35	63.64
TraesCS3D01G153500.1	Wheat	cytosol	63.79	63.09
GSMUA_Achr6P05700_001	Banana	nucleus	61.28	62.68
Os05t0212400-01	Rice	cytosol, nucleus	57.66	58.31
Zm00001d008954_P002	Maize	nucleus	63.51	57.72
GSMUA_Achr6P14310_001	Banana	nucleus	58.5	56.76
Os01t0220200-01	Rice	cytosol, nucleus, plastid	16.99	50.41
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	38.72	48.43
Bra007149.1-P	Field mustard	nucleus	10.03	37.89
Bra014767.1-P	Field mustard	nucleus	10.03	37.89
Bra034101.1-P	Field mustard	mitochondrion, nucleus	32.59	36.0
Bra019909.1-P	Field mustard	cytosol	8.91	35.56
Bra005731.1-P	Field mustard	cytosol	8.91	35.16
Bra029826.1-P	Field mustard	mitochondrion, nucleus	31.48	34.35
Bra007627.1-P	Field mustard	cytosol	77.16	16.84

Protein Annotations

EnsemblPlants:Bra004538.1	EnsemblPlants:Bra004538.1-P	EnsemblPlantsGene:Bra004538	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9
PFAM:PF09713	TIGRFAMs:TIGR01589	UniParc:UPI00025474A8	UniProt:M4CK04	MapMan:35.2	:

Description

AT2G46420 (E=1e-188) | unknown protein

Coordinates

chrA05:-:698794..700535

Molecular Weight (calculated)

39155.2 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.402

Length

359 amino acids

Sequence
(BLAST)

001: MQSSTQVSHE SQGEQKNNQS LEAPIQDSGS VSASSNDGRK VSRQDIELVQ NLIERCLQLY MNRDEVVKTL LTRARIDPGF TTLVWQKLEE ENADFFRAYY
101: IRLKLKKQII VFNHLLEHQY HLMKYPVHPK VPLVPMQNGI HPMAPVNNMP MGYPVLQHPQ MHVPGHPHID AMGMSSCHVV NGVPAPGNFQ PMRMNSGNDM
201: VIDTTAADPT PPMIPPNNGM SSVSEMPVSP ASVASSGHFP FAASDMSGMG MDTSALDSAF TSDVGTSVGL QLGPDGGAGN SRDNLRPFDQ IPWNFSLSDL
301: TADLSNLGDL GALGNYPGSP FLPSDSEILL DSPEQEDIEE FFVDSIPGPS CPQSDEDKP

Best Arabidopsis Sequence Match ( AT2G46420.1 )
(BLAST)

001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS

Arabidopsis Description

At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.