Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G171500.1 | Wheat | nucleus | 98.07 | 99.72 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 99.17 | 99.17 |
| TraesCS3A01G104000.1 | Wheat | unclear | 92.29 | 93.31 |
| KXG31543 | Sorghum | nucleus | 87.33 | 87.57 |
| Zm00001d039349_P002 | Maize | nucleus | 86.5 | 86.5 |
| Zm00001d008954_P002 | Maize | nucleus | 85.95 | 78.99 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 24.79 | 74.38 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 67.22 | 67.59 |
| GSMUA_Achr10P... | Banana | nucleus | 66.94 | 67.31 |
| PGSC0003DMT400024865 | Potato | nucleus | 67.77 | 66.67 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 64.19 | 66.38 |
| Solyc01g010520.2.1 | Tomato | nucleus | 65.01 | 65.92 |
| KRH47919 | Soybean | nucleus | 65.01 | 65.74 |
| KRH06484 | Soybean | nucleus | 65.56 | 65.56 |
| CDY42046 | Canola | nucleus | 65.29 | 64.4 |
| Bra004538.1-P | Field mustard | nucleus | 63.64 | 64.35 |
| CDX80017 | Canola | nucleus | 63.36 | 64.07 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 64.74 | 63.86 |
| AT2G46420.3 | Thale cress | nucleus | 63.36 | 63.36 |
| AT3G61700.2 | Thale cress | nucleus | 62.81 | 62.64 |
| KRG97168 | Soybean | nucleus | 61.16 | 62.01 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 62.81 | 61.62 |
| Solyc05g007270.2.1 | Tomato | cytosol | 67.77 | 60.89 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 46.83 | 59.23 |
| CDX67857 | Canola | nucleus | 58.4 | 57.92 |
| Bra003465.1-P | Field mustard | nucleus | 58.4 | 57.92 |
| CDY25057 | Canola | nucleus | 57.02 | 57.02 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 32.51 | 54.88 |
| CDX71711 | Canola | mitochondrion | 57.85 | 46.77 |
| TraesCS3A01G355400.1 | Wheat | cytosol, nucleus, plastid | 10.74 | 41.05 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 31.13 | 34.88 |
| TraesCS1A01G287200.1 | Wheat | cytosol | 9.09 | 33.33 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 27.82 | 33.11 |
| TraesCS4A01G101700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 8.54 | 21.68 |
| Bra007627.1-P | Field mustard | cytosol | 58.95 | 13.01 |
| CDY11376 | Canola | cytosol | 58.4 | 12.89 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G144700.2 | EnsemblPlantsGene:TraesCS3A01G144700 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | PFAM:PF09713 |
| SEG:seg | TIGRFAMs:TIGR01589 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:127192333..127195809
Molecular Weight (calculated)
39291.2 Da
IEP (calculated)
4.264
GRAVY (calculated)
-0.393
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDSQDIQST TELQMSPQGT NEVQSNQLNT MATDAPAGDP GSVAVANNDN RKVSREDIEL VQNLIERCLQ LYMTKGEVVR TLSTRARIEP GFTTLVWQKL
101: EEENSEFFRA YYIRLKLKRQ IVLFNHLLQH QYNLMKYPAP PNVPLAPMQN GMHPMPVNNL PMGYPVLQQP LMPAPGQPHI DPMVCGLSSG HVVNGIPAPG
201: GYHPMRMNSG NDMVVDNGAP EAAHAGAMSS DMAVSPSSAA SSHAPFTPSE IPGMAMDTSV LDSAFGSEIG NTGPLQLGAD GSSRDSIRSL GQLWNFSLSD
301: LTADLTSLGD LEALENYAGT PFLPSDSDLL LDSPDHDDIG NHDDIVEYFA DAINGSQSDE EKP
101: EEENSEFFRA YYIRLKLKRQ IVLFNHLLQH QYNLMKYPAP PNVPLAPMQN GMHPMPVNNL PMGYPVLQQP LMPAPGQPHI DPMVCGLSSG HVVNGIPAPG
201: GYHPMRMNSG NDMVVDNGAP EAAHAGAMSS DMAVSPSSAA SSHAPFTPSE IPGMAMDTSV LDSAFGSEIG NTGPLQLGAD GSSRDSIRSL GQLWNFSLSD
301: LTADLTSLGD LEALENYAGT PFLPSDSDLL LDSPDHDDIG NHDDIVEYFA DAINGSQSDE EKP
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIGKH
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIGKH
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.