Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42046 | Canola | nucleus | 99.72 | 97.28 |
| AT3G61700.2 | Thale cress | nucleus | 85.24 | 84.07 |
| PGSC0003DMT400024865 | Potato | nucleus | 77.72 | 75.61 |
| KRH06484 | Soybean | nucleus | 75.49 | 74.66 |
| KRH47919 | Soybean | nucleus | 74.65 | 74.65 |
| Solyc01g010520.2.1 | Tomato | nucleus | 74.37 | 74.58 |
| CDY25057 | Canola | nucleus | 74.09 | 73.28 |
| CDX67857 | Canola | nucleus | 74.09 | 72.68 |
| KRG97168 | Soybean | nucleus | 67.97 | 68.16 |
| Solyc05g007270.2.1 | Tomato | cytosol | 75.77 | 67.33 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 65.74 | 65.37 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 64.62 | 64.8 |
| GSMUA_Achr10P... | Banana | nucleus | 64.9 | 64.54 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 64.35 | 64.35 |
| TraesCS3A01G104000.1 | Wheat | unclear | 64.35 | 64.35 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 38.44 | 64.19 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 63.79 | 64.15 |
| Zm00001d039349_P002 | Maize | nucleus | 64.62 | 63.91 |
| KXG31543 | Sorghum | nucleus | 64.35 | 63.81 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 64.07 | 63.36 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 61.56 | 62.96 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 63.51 | 62.81 |
| CDX71711 | Canola | mitochondrion | 75.77 | 60.58 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 57.38 | 58.03 |
| Zm00001d008954_P002 | Maize | nucleus | 63.23 | 57.47 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 58.22 | 56.49 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 16.71 | 49.59 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 38.44 | 48.08 |
| CDY53585 | Canola | cytosol | 5.85 | 39.62 |
| CDY02930 | Canola | nucleus | 10.31 | 38.95 |
| CDY20432 | Canola | cytosol | 8.36 | 37.97 |
| CDX73396 | Canola | nucleus | 10.03 | 37.89 |
| CDX76114 | Canola | nucleus | 10.03 | 37.89 |
| CDY40206 | Canola | nucleus | 10.03 | 37.89 |
| CDY56714 | Canola | mitochondrion, nucleus | 33.15 | 36.28 |
| CDY41330 | Canola | mitochondrion, nucleus | 32.59 | 35.78 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 8.91 | 35.16 |
| CDY11219 | Canola | cytosol | 8.91 | 35.16 |
| CDY08617 | Canola | mitochondrion, nucleus | 31.48 | 34.35 |
| CDY00915 | Canola | mitochondrion, nucleus | 30.92 | 33.43 |
| CDX93395 | Canola | cytosol | 8.64 | 30.69 |
| CDY37956 | Canola | cytosol | 8.64 | 30.69 |
| CDY72004 | Canola | extracellular | 4.74 | 29.82 |
| CDY11376 | Canola | cytosol | 77.44 | 16.9 |
Protein Annotations
| EnsemblPlants:CDX80017 | EnsemblPlantsGene:GSBRNA2T00132895001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | PFAM:PF09713 |
| ProteinID:CDX80017 | ProteinID:CDX80017.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0004EE08BF | MapMan:35.2 | : |
Description
BnaA05g01390D
Coordinates
chrLK031819:+:1338317..1341843
Molecular Weight (calculated)
39141.2 Da
IEP (calculated)
4.498
GRAVY (calculated)
-0.402
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSSTQVSHD SQGEQKNNQS LEAPIQDSGS VSASSNDGRK VSRQDIELVQ NLIERCLQLY MNRDEVVKTL LTRARIDPGF TTLVWQKLEE ENADFFRAYY
101: IRLKLKKQII VFNHLLEHQY HLMKYPVHPK VPLVPMQNGI HPMAPVNNMP MGYPVLQHPQ MHVPGHPHID AMGMSSCHVV NGVPAPGNFQ PMRMNSGNDM
201: VIDTTAADPT PPMIPPNNGM SSVSEMPVSP ASVASSGHFP FAASDMSGMG MDTSALDSAF TSDVGTSVGL QLGPDGGAGN SRDNLRPFDQ IPWNFSLSDL
301: TADLSNLGDL GALGNYPGSP FLPSDSEILL DSPEQEDIEE FFVDSIPGPS CPQSDEDKP
101: IRLKLKKQII VFNHLLEHQY HLMKYPVHPK VPLVPMQNGI HPMAPVNNMP MGYPVLQHPQ MHVPGHPHID AMGMSSCHVV NGVPAPGNFQ PMRMNSGNDM
201: VIDTTAADPT PPMIPPNNGM SSVSEMPVSP ASVASSGHFP FAASDMSGMG MDTSALDSAF TSDVGTSVGL QLGPDGGAGN SRDNLRPFDQ IPWNFSLSDL
301: TADLSNLGDL GALGNYPGSP FLPSDSEILL DSPEQEDIEE FFVDSIPGPS CPQSDEDKP
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.